Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 154 3e-32 seq109 86.0 1e-11 >seq13 Length=341173 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||| | |||||| || || ||||| ||||| |||| ||||| || ||||| Sbjct 272659 AGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCC 272718 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||||| || ||||| |||||||| || ||||| || ||||| || Sbjct 272719 TCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGG---TCTGGCGGAATACCTTCCTTG 272775 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || | || ||||| ||||| | ||||| ||||||||||| || ||||| Sbjct 272776 TCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATA 272835 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||||||||| |||||||| Sbjct 272836 GTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCAT 272870 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| ||||| || | ||||| || || ||||| || |||| Sbjct 273166 CATG-CCACCACGGAGACGAAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGT 273224 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| ||||| || | ||||||||||| |||||||| ||||| || | Sbjct 273225 CGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTG---GT 273281 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || || || |||||||| || | || ||||| || |||| ||||| | Sbjct 273282 CTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGG 273341 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | || || ||||| ||||| ||||| ||||| Sbjct 273342 ACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || || || | || ||| |||||||| || |||| Sbjct 272868 CATG-CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGT 272926 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || ||||| || | ||||||||||| ||||| ||||| || || | Sbjct 272927 CCGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTG---GT 272983 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || || || |||||||| || | || ||||| || || | ||||| | Sbjct 272984 CTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGG 273043 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 |||| || || || ||||| ||||| ||||||||||| || |||| || Sbjct 273044 ATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGACTA 273091 >seq109 Length=59048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 167/245 (68%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 |||||||| || | ||| | |||||| | || || |||| ||| | | |||| Sbjct 41753 GAAGCAGTCACCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGC 41812 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--G 269215 |||||||| | |||||| || || || || ||||| || ||| | |||| || | Sbjct 41813 ATGAATGCTAAGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGG--CTTCTCGTTG 41870 Query 269216 CACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTT 269275 | || ||| | |||| | ||||| | | || ||||||| ||| ||||| || | Sbjct 41871 CTCTTGGTAACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCT 41930 Query 269276 CGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTG 269335 | |||| || ||||| ||||||||||| |||||||| | || || || |||||| Sbjct 41931 CCCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTG 41990 Query 269336 TAATG 269340 | ||| Sbjct 41991 TCATG 41995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648656557640