Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq109 123 3e-23 seq96 114 2e-20 >seq109 Length=59048 Score = 123 bits (136), Expect = 3e-23 Identities = 307/462 (66%), Gaps = 23/462 (5%) Strand=Plus/Minus Query 125748 CCAGCTTGCCG-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||||| | | || || ||||| ||||||||||||||||| ||||| || | | | | Sbjct 41988 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAG 41929 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 125864 ||||| ||||| || || || ||||| | | ||| | | || ||| ||| | | Sbjct 41928 ATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCA 41869 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 ||| || | ||| | |||| |||||||||||| |||| || || ||||| | Sbjct 41868 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGC 41811 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 ||| ||| ||| ||||| || || | |||| ||| ||| || || ||||| Sbjct 41810 CGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAG 41751 Query 125985 GCACGATGGCGTGAA------TGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGA 126035 | |||||| | || ||| ||| ||| | || || | || || Sbjct 41750 TGATGATGGCCTCAACAGCACTGGGGTC------AGGACGATAGTTGAGGTGAGA---GA 41700 Query 126036 AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 126095 | || |||||| || ||| || || |||||||||||||||||||| || |||| Sbjct 41699 ACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGA 41640 Query 126096 AGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCG 126155 || ||||| ||||||||||| |||||||||| |||||| || | || || || Sbjct 41639 AGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGC 41580 Query 126156 AGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCT 126197 |||||| || ||||| || || || |||| || |||| Sbjct 41579 TGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCT 41538 >seq96 Length=72333 Score = 114 bits (126), Expect = 2e-20 Identities = 676/1069 (63%), Gaps = 28/1069 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| || |||||||| || | ||||| || Sbjct 49880 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 49821 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||| | || || || || | || ||| | ||| || || || |||||| Sbjct 49820 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 49761 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774 || ||||| || ||||| | || || || | | | || |||||||||| || Sbjct 49760 GCGCCTCGATCAGCGGCCATCTGAA-CA-ATAGTACGTTGAGAAATTTCCCACACGGTCT 49703 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 |||| || ||| || || ||||||| | ||| ||||||||||| ||||| | Sbjct 49702 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 49643 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 || || | | ||||||| | ||||| || || | | || || | | | Sbjct 49642 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 49583 Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 113951 | ||| | ||||||| ||||| || || || || | | || ||||| |||| Sbjct 49582 GCCATGGGT--TGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 49526 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC-GGTGGAGGCTGTGGGC 114010 ||||| || ||||||||||| ||| | |||||| | | | |||| ||| || ||| Sbjct 49525 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 49467 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| || | || | |||||||||| ||| | | || | || || | Sbjct 49466 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 49407 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACCT 114127 |||||||| || || | ||| | | | ||||||||| | || |||||||| Sbjct 49406 TCCCAGTCCCAG---AGGTCGGTCGGCGTTACGTTCCACATATCGTATTGAAGGATACCC 49350 Query 114128 TGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAG 114187 || || | || || ||||| | | |||||| || || |||| || | ||| | Sbjct 49349 TGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACAC 49290 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247 || | || || || || | ||||| || || | | |||| |||||| Sbjct 49289 GATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCT 49230 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 ||| || || || | ||||| | || |||| || || || ||||| || Sbjct 49229 TCGGGAGAGTCGAAGGGCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCC 49170 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTT--TCGAGCGGTCTCCACGGGATAAAAAT 114365 | |||| |||||||| | | ||| ||| ||| || || || || || | Sbjct 49169 ACAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGT 49112 Query 114366 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 114425 ||| || || | || || | ||| || || |||| |||| |||||| || || Sbjct 49111 TCCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGC 49052 Query 114426 CGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 114482 | |||| | || |||| | ||| ||| | |||||||||| || || |||| Sbjct 49051 CAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCA 48995 Query 114483 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 114542 ||||| || | |||||| | ||||| || | ||||| || || | |||| Sbjct 48994 AGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTG 48935 Query 114543 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 114602 |||| || || || | |||||||||||| |||| ||| || | ||||||||||| Sbjct 48934 AACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAA 48875 Query 114603 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 |||| | || | || |||||||| |||| || |||||| || | ||| Sbjct 48874 GCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 48826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350762570400