Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq96 138 1e-27 >seq96 Length=72333 Score = 138 bits (152), Expect = 1e-27 Identities = 330/493 (67%), Gaps = 7/493 (1%) Strand=Plus/Plus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| || | || || || ||||| || || |||||| ||| || ||| |||| || | Sbjct 48194 CCATG-CCTCTCCCACTCTCTTCAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCT 48252 Query 93947 TCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGT 94005 |||| || ||| | |||| ||| ||| || || | ||||| || ||| |||| Sbjct 48253 TCCTCATTGAC-ATGAAGGAGGACAGTATCGAAGGTATCTACGACACACTGAAGACCTGT 48311 Query 94006 GCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCA 94063 || || ||||| || || |||||||| | | |||||| |||| ||||||| Sbjct 48312 GCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAACGTCCAC--CGTATCCGTGCCA 48369 Query 94064 GGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGG 94123 || |||||||| || ||||| ||| |||||||||| ||||||| ||||| || | Sbjct 48370 CCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTG 48429 Query 94124 TCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCG 94183 | ||||||||| | || | || || ||||||||||| | | | ||| | || | Sbjct 48430 TGTTCAACAACACTGCCAGATATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTTG 48489 Query 94184 CGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACC 94243 | |||| || ||||| |||||||| || | | ||| | ||||| || ||||||| Sbjct 48490 CTATCTACCTGGAGCCATGGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACC 48549 Query 94244 ACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTT 94303 | || || || | | ||| | || || |||| || | ||| || || | | Sbjct 48550 ATGGAAAGGAAGAAGTCCGTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGT 48609 Query 94304 TTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCG 94363 | ||||| || || || || || || |||| || || || || ||||| ||| | Sbjct 48610 TCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTG 48669 Query 94364 GACTGTCCGACGT 94376 || || | || || Sbjct 48670 GATTGGCTGATGT 48682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720850064800