Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 109 5e-19 seq109 100 3e-16 >seq13 Length=341173 Score = 109 bits (120), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||||||| |||| || ||||| | | |||||| || ||||| || ||| | Sbjct 272644 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 272703 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || ||||| || | | |||| |||||||| ||||| || || Sbjct 272704 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 272763 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || | ||||| || | ||| || | |||||| | || || | Sbjct 272764 ATACCTTCCTTGTC-CTGGATCTTTGTCTTGACGTTG-TCTATCGTGTCGCTGGATTCTA 272821 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || ||||| || || || || ||||||||| || Sbjct 272822 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 272874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||| ||||||||||| | || || ||||||||| ||||| || | Sbjct 272903 TTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTG 272962 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| ||||| || ||||| ||||| || || || ||||| || | || || || Sbjct 272963 CAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTC-CTGGATCTTGGTCTTG 273021 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||||| | || || ||||| | || | || || || |||||||| Sbjct 273022 ACGTTG-TCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGT 273080 Query 138597 TTTTAC 138602 ||| || Sbjct 273081 TTTCAC 273086 >seq109 Length=59048 Score = 100 bits (110), Expect = 3e-16 Identities = 300/453 (66%), Gaps = 25/453 (6%) Strand=Plus/Plus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC--CGGCAGCTTTGCCGC 52453 ||||| | || ||||| || |||||||| | |||| ||| |||| ||| ||| | Sbjct 41538 AGCGCCTTGTTGCCTTTGCTGCCGTCGAGGG--TATTTTCTTCAGCGGCTCCTTCGCCTC 41595 Query 52454 CATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGAT 52513 |||||| | | || | | || | |||||||| || || ||| |||||| | || Sbjct 41596 CATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCAT 41655 Query 52514 ATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGA 52572 || || |||||||| || ||||| || ||||| ||||| || | | | | | Sbjct 41656 CTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTT--------CTC-TCA 41706 Query 52573 CCGAAAAATTGGATTCGGACACGA----TCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 || || | | | | ||| | | | |||| ||| ||| || || || | | Sbjct 41707 CCTCAACTATCG-TCCTGACCCCAGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCA 41765 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| ||||||| || || | || || || | || || |||||||| || || Sbjct 41766 TCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGC 41825 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA 52745 ||||||| ||||||| ||||| || || ||| | || | || |||| || | | | Sbjct 41826 TCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTT--GCTCTTGGTAACAA 41883 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 |||| || |||| | ||| || || || || ||| |||| || || || | ||||| Sbjct 41884 GAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAA 41943 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||||||||||| || || || || Sbjct 41944 GACCAACTTCTTCGAGAAGCGTGTTGGAGATTA 41976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260042753600