Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13 109 5e-19 seq109 96.9 3e-15 >seq13 Length=341173 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||| ||||||||| | ||| ||| || || || || |||||| | Sbjct 272644 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 272703 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || |||||||||||||| |||| | |||||||| || || || Sbjct 272704 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 272763 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||||| |||| || | ||||| | || || Sbjct 272764 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTG-TCTATCGTGTCGCTGGATTCTAC 272822 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | |||||||| ||||| || || || || ||||||||| || Sbjct 272823 TTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 272874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||||||||| || |||| | || ||||| || ||||| |||||||||||| Sbjct 272944 TCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTG 273003 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||| | ||||| || | || | Sbjct 273004 TCCTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCGCTGGATTCGACCTCAAGAGTGAT 273062 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || ||||||||||||||||| || Sbjct 273063 GGTCTTGCCGGTCAGAGTTTTCAC 273086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| || || ||||||||||| || | Sbjct 273205 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAA 273264 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||| |||||||| || || || ||||||||||||||| ||| || ||||| ||| Sbjct 273265 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 273324 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | || | ||||| | ||| || |||| ||| | || |||||||| Sbjct 273325 G-TCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 >seq109 Length=59048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 ||||| ||| |||| ||| |||||| || |||| || || ||| | | | || Sbjct 41753 GAAGCAGTCACCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGC 41812 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 ||||| || || | ||| | ||||||| || || |||||||| | || |||||| Sbjct 41813 ATGAATGCTAAGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCT 41872 Query 47475 CTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTC 47533 || ||| | ||| | ||| ||||| || || ||||| || ||| |||| || || Sbjct 41873 CTTG-GTAACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTC 41931 Query 47534 GCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| |||||||||||||| ||||||||||| || || || || Sbjct 41932 CCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTA 41976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498541371200