Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31]
380 sequences; 22,521,034 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq109 136 5e-27
seq96 98.7 1e-15
>seq109
Length=59048
Score = 136 bits (150), Expect = 5e-27
Identities = 309/458 (67%), Gaps = 15/458 (3%)
Strand=Plus/Minus
Query 127221 CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279
||||||| | | || || || || ||||||||||||||||| ||||| ||| ||||| |
Sbjct 41988 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAG 41929
Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337
||||| ||||| || || || ||||| | | ||| | | || ||| ||| | |
Sbjct 41928 ATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCA 41869
Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397
||| || | ||| | |||| |||||||||||| |||| || || ||||| |
Sbjct 41868 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGC 41811
Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457
||| ||| ||| ||||| || || | |||| ||| ||| ||| || |||||
Sbjct 41810 CGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAG 41751
Query 127458 GTACGATGGCGTGAATAGTGTCCACCC----CAGGTCTATTGCGTAAAGTCTT-GAAGAG 127512
| |||||| | || || ||| |||| | || | | | || ||| ||
Sbjct 41750 TGATGATGGCCTCAACAG----CACTGGGGTCAGGACGATAGT-TGAGGTGAGAGAACAG 41696
Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572
||||| || ||| || || |||||||||||||||||||| || ||||||
Sbjct 41695 AAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGT 41636
Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632
|| || ||||||||||| |||||||||| |||||| || | || ||||| |||
Sbjct 41635 GAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAA 41576
Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCT 127670
||| || ||||| || || || |||| || ||||
Sbjct 41575 GAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCT 41538
>seq96
Length=72333
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482
|||||||||| || || |||| ||||| || | |||||| | ||||| || |
Sbjct 49015 TAGGAAGGGCAATAGAAGCCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAA 48956
Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542
||||| || || | |||||||| || || || | |||||||||||| ||||
Sbjct 48955 CGATTTCAGTGCAAAGGTTTGAACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTC 48896
Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602
||| || | ||||||||| |||||| | || | || |||||||| |||| || |||||
Sbjct 48895 GGTTGCAGGAATCCTTGTAAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAA 48836
Query 116603 TAGCCTTCCATA 116614
| || | |||||
Sbjct 48835 TGGCGTACCATA 48824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613504285840800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |