Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq109 136 5e-27 seq96 98.7 1e-15 >seq109 Length=59048 Score = 136 bits (150), Expect = 5e-27 Identities = 309/458 (67%), Gaps = 15/458 (3%) Strand=Plus/Minus Query 127221 CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | | || || || || ||||||||||||||||| ||||| ||| ||||| | Sbjct 41988 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAG 41929 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 ||||| ||||| || || || ||||| | | ||| | | || ||| ||| | | Sbjct 41928 ATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCA 41869 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 ||| || | ||| | |||| |||||||||||| |||| || || ||||| | Sbjct 41868 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGC 41811 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||| ||| ||| ||||| || || | |||| ||| ||| ||| || ||||| Sbjct 41810 CGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAG 41751 Query 127458 GTACGATGGCGTGAATAGTGTCCACCC----CAGGTCTATTGCGTAAAGTCTT-GAAGAG 127512 | |||||| | || || ||| |||| | || | | | || ||| || Sbjct 41750 TGATGATGGCCTCAACAG----CACTGGGGTCAGGACGATAGT-TGAGGTGAGAGAACAG 41696 Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 ||||| || ||| || || |||||||||||||||||||| || |||||| Sbjct 41695 AAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGT 41636 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 || || ||||||||||| |||||||||| |||||| || | || ||||| ||| Sbjct 41635 GAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAA 41576 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCT 127670 ||| || ||||| || || || |||| || |||| Sbjct 41575 GAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCT 41538 >seq96 Length=72333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 |||||||||| || || |||| ||||| || | |||||| | ||||| || | Sbjct 49015 TAGGAAGGGCAATAGAAGCCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAA 48956 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 ||||| || || | |||||||| || || || | |||||||||||| |||| Sbjct 48955 CGATTTCAGTGCAAAGGTTTGAACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTC 48896 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602 ||| || | ||||||||| |||||| | || | || |||||||| |||| || ||||| Sbjct 48895 GGTTGCAGGAATCCTTGTAAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAA 48836 Query 116603 TAGCCTTCCATA 116614 | || | ||||| Sbjct 48835 TGGCGTACCATA 48824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504285840800