Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq109 159 3e-34 seq13 136 4e-27 >seq109 Length=59048 Score = 159 bits (176), Expect = 3e-34 Identities = 356/518 (69%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||| || || || || || ||||| || || || || || || | Sbjct 41995 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 41936 Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGC 132706 | ||| || | ||| || || || |||||||||| ||||||||| | |||| | | Sbjct 41935 GAGGGAGAT-ATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTAC 41877 Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCG 132765 | | || | ||||| ||||| ||||| |||||||| ||||| || ||||| | || | Sbjct 41876 CAAG-AG--CAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAG 41820 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824 || | | | || || || |||| || || || ||||| | || |||||||||| Sbjct 41819 CATTCATG-CCGAGAAGG-GCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGT 41762 Query 132825 GACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCT 132883 ||| || || |||| ||| || ||| || | | | || || || | | || Sbjct 41761 GACTGCTTCAGTGATGATGGCCTCAACA-GCACTGGGGTCAGGACGATAGTTGAGGTGAG 41703 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||||| | ||| ||||| || || | ||| ||||| | ||| |||||||||||| Sbjct 41702 AGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGG 41643 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||| || || || || ||||| || |||| |||||| || Sbjct 41642 AGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGC 41583 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CT 133062 | ||||| | ||||||||||| || || || || ||||||| |||| |||| | Sbjct 41582 CGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAAT 41523 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| || | |||||| || | ||||| |||||||| Sbjct 41522 TCTTATCTTG-GATCCATCGAATGGCCCAATCGGCCTT 41486 Score = 129 bits (142), Expect = 6e-25 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||||||| || || |||| ||||| | |||||||| ||| || ||| Sbjct 41361 TAGGTGTCGATGAGGAGAGAGTATGTTTCGGAGTGAATATTCTCCATCATGATCTGGAAG 41302 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||| || || || ||||| ||||| | |||||| || | || || Sbjct 41301 CCATAGAAGCATCGAGCTTCCGGTACCTGGACTTCGTTGCTGAAACGTTCAAGGAGGTTC 41242 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||| |||||||| || ||||||||| ||||||| ||||| |||||| || Sbjct 41241 TCGTTAACGATGCCATCTGAGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGAATCGT 41182 Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | ||| || | | | ||||||| | | ||||| || ||||| | ||| ||| Sbjct 41181 TCATCGTCATTGAGCCTGTTGTTCCAGTCGTGAATATCCTTAGAGAGGTCAATCTCTTCG 41122 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || ||||| |||||||| Sbjct 41121 GCAGTCCAGAAAGAAGCTTCAGCTTTCTTGTACAT 41087 >seq13 Length=341173 Score = 136 bits (150), Expect = 4e-27 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||||||||| ||||| | || || || ||| | Sbjct 272870 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 272811 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||| |||| ||||| || || ||||| | |||| Sbjct 272810 GACACGATAGACAACG--TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACC 272753 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || |||||||| || |||| || || || ||| || | Sbjct 272752 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 272693 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| ||| |||||||||||||||| ||| ||||||| Sbjct 272692 ACATCCAGAAGGAGAGC-ACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 272644 Score = 118 bits (130), Expect = 1e-21 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| ||||| || || ||||| |||||||| | || ||||| ||| ||||| | Sbjct 273091 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 273032 Query 38311 TGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | |||| || |||| ||||| ||||| || || | ||||| || || Sbjct 273031 TCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACG 272974 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 272973 TCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCA 272914 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| | || || || | || || ||| || | || ||| Sbjct 272913 AAAGGAATCAACTCTCCACCTTGTCCTTCGTCTGCGTGGAGGC 272871 Score = 109 bits (120), Expect = 5e-19 Identities = 129/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| || |||||| |||| || ||| ||| ||||| | | |||| | || Sbjct 273374 TCACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG--TCAA 273317 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| ||||| || ||| | ||||| ||||| || || | || || Sbjct 273316 GACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGG 273257 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 |||||||| || |||| ||||||||| ||||||||||||||| ||||| Sbjct 273256 AAAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 273206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170424179200