Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq119 100 2e-15 seq47 86.0 5e-11 >seq119 Length=46604 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || ||||| || ||||| ||||| | ||| | || | || | | ||| Sbjct 38943 ACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACT 38884 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || ||||| | | || || | ||||| ||| |||||||| | ||| Sbjct 38883 TCGAAGATACCCTCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCG 38824 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || ||| || || || ||||| || |||| ||||||| Sbjct 38823 AAGATGAGAACGTTGCGCTCACCGTCGGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCA 38764 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 ||||| || || || || || | | || || ||||| ||||| || || || ||| Sbjct 38763 GCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTA 38704 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || ||||| | || || ||||| || || ||||| ||||| || || || Sbjct 38703 GTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 38654 >seq47 Length=178441 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 668842 TGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGA 668901 || |||| ||| || |||||||||||| | || || |||||||||||||||| || Sbjct 112214 TGGAAGACTAAAGGGAAAAGAAGGTCGTCTCCGACAGAACCTGATGGGAAAACGTGTGGA 112155 Query 668902 TATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGT 668961 | || || ||||| || |||||| ||||| ||| | |||| |||| ||||| || Sbjct 112154 CTTCTCAGCTCGTACTGTCATTACTGGCGATCCGAATCTCTCTCTTGATGAGGTTGGAGT 112095 Query 668962 TCCTCTTATTATTGC 668976 |||| ||| ||||| Sbjct 112094 TCCTATTAGCATTGC 112080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780803543148280