Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq119 264 1e-65 seq4 141 1e-28 seq39 125 9e-24 seq96 122 1e-22 >seq119 Length=46604 Score = 264 bits (292), Expect = 1e-65 Identities = 472/686 (69%), Gaps = 6/686 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || || || | |||||||| |||||||| Sbjct 38931 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATACCC 38872 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 38871 TCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGAACG 38812 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || |||| ||||| ||||||||||| || ||||| || || || || || Sbjct 38811 TTGCGCTCACCGTCGGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCAGCAGTGGGCTCG 38752 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || ||||| || Sbjct 38751 TTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTAGTAGCTTGACGC 38692 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || | ||| |||| |||| | ||||||| Sbjct 38691 TGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTGTTGACGGTGCCACCGAGA 38632 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || ||||| || || || || |||| | Sbjct 38631 TAGGCCTCGGCGGTCTCACGCATCTTGGTGAGGACCATGGAGGAGATTTCCTCAGGGGTG 38572 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| ||| || || || || || || | | ||||| || |||| | | Sbjct 38571 AACTGCTTCTCCTCGCCCTTGAACTCGACCTGGACGATGGGCTT-GCCGCTCTTC--TCG 38515 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | |||||| | | | | ||||| ||| | ||||||| ||| ||||| | | Sbjct 38514 ACAACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGTTGAACTTGCGT 38455 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| ||||| || || ||||| | ||||||||||| |||||||| Sbjct 38454 CCAATGAGACGCTTAGCATCGAAGACGGTGTTGATAGGGTTCATGGCGACCTGGTTCTTT 38395 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || || ||| | || || || || Sbjct 38394 GCGGCATCTCCAATGAGACGCTC---GGTGTCTGTGAAGGCAACGAAGGAGGGAGTGGTG 38338 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || || ||||| || || ||||| | |||||| | | ||| || ||||| Sbjct 38337 CGGTTTCCCTGATCGTTGGCGATGATTTCAATGCGGTCATCACGGAAGATACCCACGCAG 38278 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || ||||| ||||| Sbjct 38277 GAGTACGTGGTACCCAAATCGATACC 38252 Score = 167 bits (184), Expect = 3e-36 Identities = 256/365 (70%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || || ||||||||||| || | || || Sbjct 39436 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACGGCTTCATCGGGGTTGATGGACTTGTTT 39377 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || | || || | ||| | || || || ||||| || || || Sbjct 39376 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGGATACGAGTAGAA 39317 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | || || || | || || || |||||||| | ||| || || | Sbjct 39316 CCACCGACGAGGACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACT 39257 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 |||||||| |||||| ||||| | |||| || || ||||| ||||| ||| Sbjct 39256 CGCTCGACAGGCTCCATAGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGAGCA 39197 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| ||||| || || || | |||||||| ||||||| || Sbjct 39196 CGGGTGATGGAGGTGTAGAAGTCAACACCCTCATAGAGAGAATCAATCTCAATGGAGGTC 39137 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||||| | || ||||| || ||||| || || || || | ||| || || Sbjct 39136 TGGGCAGCAGAAGAGAGAGTACGCTTAGCACGCTCGCAGGCAGTGCGGAGACGGCGGAGA 39077 Query 7382 GCACG 7386 ||||| Sbjct 39076 GCACG 39072 >seq4 Length=489520 Score = 141 bits (156), Expect = 1e-28 Identities = 359/539 (67%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||| || || | || ||| || | |||||| | | || ||| Sbjct 214258 TCCTCGAAACGAGCACGAGTGATCTGGGCATTGAAGTCCTCACCGTCGAAGAGAGAGTCA 214317 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || | ||| || || | | || | || ||||| || ||||| || || || Sbjct 214318 ATCTCGACGGTAGTCTGAGTAGCGCTGGAAAGAGTACGCTTAGCACGCTCGCAAGCAGTG 214377 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | | || ||||| | | || |||||| | ||| ||||| || || ||||| Sbjct 214378 CGGAGTCTTCGGAGGGCTCTGGAGTCACCGGAGAGATCCTTCTTGGTCTTGCGGGTAAAC 214437 Query 7427 TCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 || | |||||| |||| |||| | | |||||||| | |||||| | || ||||| Sbjct 214438 TCCTTCTTGAAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGACCACCAAGATGGGTATC 214496 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || || || || ||||| |||| ||| || | ||||| | | || ||||| || Sbjct 214497 ACCGGCAGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTGAGGAGGGAGACATCGAA 214556 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTC---GTCTTTGTTCTTA- 7600 ||||||||||| || || | ||||| || || || | || | ||| | | | Sbjct 214557 AGTACCACCACCGAGATCGTAGATGAGGACATTGCGCTCCTTCTCGGACTT--TCCAGAG 214614 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||| || || || || || || || || || || ||||| ||| ||| || Sbjct 214615 CCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGAACGTTGAGA 214674 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || ||||| | | ||||| || || || |||| || ||||| |||||||| ||| Sbjct 214675 CCGGCAATGGCACCAGCATCCTTGGTGGCCTGTCTCTGGTTGTCGTTGAAGTAGGCTGGG 214734 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | ||| |||| ||||| | | || || | |||||||| Sbjct 214735 ACAGTGATGACAGCCTTGGAGACGCTCTTTCCGAGCTTAGTCTCGGCAACCTCTTTCAT 214793 >seq39 Length=193750 Score = 125 bits (138), Expect = 9e-24 Identities = 228/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || ||||| || ||| || ||| ||| Sbjct 145218 TCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCGAAGGCACCC 145277 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | || ||||| || ||||||||||| || || | | || | Sbjct 145278 TTGTCAATGGAGAGGAGAGAGACATCGAAAGTACCACCACCGAGATCGTAGACGATGA-- 145335 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||||| || | ||||||||||| || ||||| || || ||||| || Sbjct 145336 -TC-TGGCGCTCGTCACCAGTCATGTCGAGACCGTAGGCAATAGCTGCGGCAGTTGGCTC 145393 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 |||| || || || ||| |||||| || || || || | || || || || || |||| Sbjct 145394 GTTAACAACACGGATGAC-GTTCAGACCGGCGATGGTACCAGCGTCCTTTGTGGCCTGTC 145452 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 || || || |||||||| ||||| || ||||| || | |||| ||| |||| Sbjct 145453 TCTGGTTGTCATTGAAGTAGGCGGGGACAGTGACGACAGCATGGCTGACAGTCTCTCCGA 145512 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 | ||| || ||||| || ||||| || Sbjct 145513 GGTACTTCTCGGCGATGTCCTTCATCTT 145540 >seq96 Length=72333 Score = 122 bits (134), Expect = 1e-22 Identities = 338/514 (66%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 105484 TCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGAC 105543 || ||||||| ||||| || || | | || |||| || ||| || || | | | Sbjct 48700 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 48641 Query 105544 CAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAG 105603 |||| |||| |||||| || |||||||||||||| ||| |||||| ||| | || Sbjct 48640 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAAT 48581 Query 105604 AGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGA 105663 || || || | | ||||| | || || ||| || | || || || || | Sbjct 48580 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 48521 Query 105664 ATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC----GACGCCCCGC 105719 ||||| ||||||||||| || | |||| |||| | ||| || | ||| | | Sbjct 48520 ATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC-C 48462 Query 105720 TTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGA 105779 || | ||||||||| || || ||| |||| || | ||| || | || || | ||| Sbjct 48461 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 48402 Query 105780 TGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCC 105839 | || || |||||| ||| | ||| | ||||| | | ||| |||| | || Sbjct 48401 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 48342 Query 105840 AATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTC 105899 || || ||||| ||| || ||||| || | ||| ||||| ||||| || Sbjct 48341 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 48282 Query 105900 GATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTAC 105958 |||||| || ||||| | |||| ||||| || || | |||||| || ||| || || | Sbjct 48281 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGG-CTGCGGGGTTC 48223 Query 105959 CAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 | |||||||| ||||| || | ||||| |||| Sbjct 48222 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAA 48189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129783119200