Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq96 150 2e-31 seq109 109 7e-19 seq97 86.0 8e-12 >seq96 Length=72333 Score = 150 bits (166), Expect = 2e-31 Identities = 471/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || |||||| || | || || |||||||| | || | |||||||||||| || Sbjct 48826 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 48885 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| |||||| ||||||||||| | ||| ||| ||||| ||||| || Sbjct 48886 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 48945 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 48946 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 49005 Query 112458 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 112516 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 49006 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 49064 Query 112517 AGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 112576 ||| || | || | |||| | |||||| | ||||| | || ||||| || Sbjct 49065 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 49124 Query 112577 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCT 112636 ||| || || | ||| | | || || || |||| | | || ||||| || || Sbjct 49125 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 49184 Query 112637 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 112696 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 49185 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 49244 Query 112697 TGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA--GGCGAGTTCGGAGTTGGCA 112754 | | || || ||||| | || || || || |||| | || | | ||| || Sbjct 49245 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 49303 Query 112755 GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAA 112814 |||| ||||||||||| ||| ||||||||||| | ||| || || | |||||| Sbjct 49304 -AGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTTCAA 49362 Query 112815 TTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGA 112870 | ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 49363 TACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGC 49418 Query 112871 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 112930 ||| || | ||| | ||||||||| | | | || || |||||||| ||| Sbjct 49419 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 49478 Query 112931 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 49479 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 49535 Score = 131 bits (144), Expect = 2e-25 Identities = 410/630 (65%), Gaps = 19/630 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||| | ||||| || || |||||||||| || || || |||| || Sbjct 48096 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 48155 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | || |||||| | ||||||| | || |||| ||| || | || || ||||| Sbjct 48156 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 48214 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || || |||||| | || ||||| |||| | |||||||| Sbjct 48215 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 48274 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGG 111846 ||| | || || |||| ||| |||||| ||||| || |||||| | Sbjct 48275 CAGTATCGAAGGTATCTACGACAC----ACTGAAGACCTGTGCTTTGATTTCAAAGACTG 48330 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 |||| || ||||| | || |||| | || | |||| | || ||| || | Sbjct 48331 CTGGAGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAA 48390 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | || || | || |||||||| || || ||| ||| || | | Sbjct 48391 CCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGAT 48450 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| |||| | ||| ||||| ||| || | || |||| || ||||||| Sbjct 48451 ATGTCGACCAGGGTGGCAACAAGCGTCC--AGGTGCCTTT-GCTATCTACCTGGAGCCAT 48507 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| |||||| | ||||||||||| | || ||||| || | || || | | Sbjct 48508 GGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCC 48567 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| Sbjct 48568 GTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAA 48627 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| |||| ||||| | || || || || | |||| || || | | |||| | | Sbjct 48628 AGAATGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACG 48687 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGT 112230 | || ||||| || || | ||| ||||| Sbjct 48688 GAGAAGAGTTCGAGGCATTGTACGAAAAGT 48717 >seq109 Length=59048 Score = 109 bits (120), Expect = 7e-19 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 102168 ||||||||| || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 41467 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 41522 Query 102169 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 41523 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 41582 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 41583 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 41642 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 41643 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 41688 >seq97 Length=71526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 216/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || || | | || || | ||| ||| |||||||||||| | Sbjct 39540 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 39485 Query 16035 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 39484 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 39427 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 | ||| ||||| |||| ||||| |||| || || || ||||| | ||| Sbjct 39426 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 39367 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 16204 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 39366 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 39308 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 39307 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 39248 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || || || || || Sbjct 39247 AGCTCCTCGAGGTATTTTCGCACC 39224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739451473600