Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq96 158 1e-33 seq22 105 8e-18 >seq96 Length=72333 Score = 158 bits (174), Expect = 1e-33 Identities = 407/617 (66%), Gaps = 5/617 (1%) Strand=Plus/Minus Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACA 110582 |||||| |||| || || | |||||| ||||||| | || |||| | || || Sbjct 48710 GTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCA 48651 Query 110583 GAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACAT 110642 ||| |||| ||||| ||| || ||||| | ||||||||||| |||||| |||||| Sbjct 48650 GAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAA 48591 Query 110643 CGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAA 110702 ||| |||| || |||||| ||| | ||||| | || ||||| ||| || || | Sbjct 48590 GGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAG 48531 Query 110703 AAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG--- 110759 || || | |||||| | ||||||||| || || |||| ||| | || || ||| Sbjct 48530 GAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTT 48471 Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819 || |||||| ||||| | || ||| ||||| || | ||||| || | || Sbjct 48470 GTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGAT 48411 Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 ||| | ||| || || || || ||| ||| ||||||| || ||||| Sbjct 48410 TCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGAC 48351 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCAT 110938 | | ||| || || || || ||| ||| ||||| ||| | ||||| | | Sbjct 48350 GTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCT-TCAGTGTGTCGT 48292 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||| || || || |||| || |||| || ||||| |||| ||| || || Sbjct 48291 AGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCT 48232 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058 | || ||||| ||||||||||| || || | ||||| |||| |||||||| Sbjct 48231 GCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGA 48172 Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118 |||||||| || | | | || || | |||||| ||||| | ||||||||||| Sbjct 48171 GATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCA 48112 Query 111119 TGAACATATATTGAGGC 111135 | | ||||| || ||| Sbjct 48111 TTATCATATGCTGTGGC 48095 >seq22 Length=270490 Score = 105 bits (116), Expect = 8e-18 Identities = 200/291 (69%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| ||||| | ||| |||||||||||||||| ||||||| | | | | || | Sbjct 81230 GAAGCCGTCGAGTTCGGTGAGAAGCTGGTTGAGAGTCTGTT-----TGA-CATAGGCTG- 81178 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 ||| | | | | ||||| || | || |||| ||||||||||| | |||| Sbjct 81177 CAT--CTCGTTCGTTTCGCTTGGCGCCAATGGCATCAAGTTCATCGATGAAGATGATAGC 81120 Query 11712 CGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 ||| |||||||| ||||| | || |||||||| |||||||| ||||||||||| || Sbjct 81119 TGGTGCTTTGGCACGGGCCTGGGCAAACAGTTCACGGACACGCTTAGCTCCAACACCGAC 81060 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 | | ||||| |||| | | | |||| | | ||||||||| | || ||||| Sbjct 81059 GTATATCTCGTCGAACTCGGAGCCAGACATGTAGAAGAAGGGAACGCCTGCTTCTCCAGC 81000 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 | |||| || || ||||| ||||| || || || | ||| ||||||| Sbjct 80999 AACAGCTCTGGCAAGAAGAGTTTTACCGGTTCCGGGAGGTCCAACGAGAAG 80949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973202364000