Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq96 138 1e-27 >seq96 Length=72333 Score = 138 bits (152), Expect = 1e-27 Identities = 445/688 (65%), Gaps = 2/688 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || || || || || |||| | | || |||||| |||||||| || | | | Sbjct 48701 CTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGT 48642 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 |||||| ||| |||| |||| |||| || | ||| || |||| | || | || Sbjct 48641 CCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAA 48582 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || ||| | | | | |||||| || ||| ||| | || ||||| || || | Sbjct 48581 TAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAA 48522 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 |||||||| |||||||| || | || || || | ||||||| || || || || || Sbjct 48521 GATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACC 48462 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | |||||||||||| ||||| | || | | ||| ||||| || || || || Sbjct 48461 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 48402 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 || |||||||| | ||| || ||| | || | ||| | || ||| Sbjct 48401 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 48342 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 || || || || | || || || | |||||| || || || || || || ||||| Sbjct 48341 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 48282 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 ||||| || || |||| | | || || || || ||||||||| || ||||| Sbjct 48281 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 48222 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| || | || ||||| ||||| | || |||||| || | | || ||||| Sbjct 48221 GGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGT 48162 Query 48665 TTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAACATAT 48723 |||||| || || | ||| || | || ||||| | | || ||||||| ||||| Sbjct 48161 TTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATAT 48103 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 || || | |||| ||| ||| || || | || ||||| |||| | || | Sbjct 48102 GCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCT 48043 Query 48784 TAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || || ||||| | ||| |||||| Sbjct 48042 TGAAGCCGAAATACTGGTAGTTAAAGTC 48015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106129983200