Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq109 138 2e-27 seq96 132 9e-26 >seq109 Length=59048 Score = 138 bits (152), Expect = 2e-27 Identities = 346/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||| || || Sbjct 41980 CTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTC 41921 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| ||||| || | | | ||| | || | | || Sbjct 41920 CATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTA--CCAAGAGCAACGAGA 41863 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || ||| |||||| |||| ||||| | ||||||| | |||||||| | ||| Sbjct 41862 AGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGG 41803 Query 48017 GACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||| ||| | || | || | ||||||| ||| || || ||||| | || Sbjct 41802 G-CACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 41744 Query 48076 CTGCTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| | || || | | | |||| ||||| | | || | ||| Sbjct 41743 GGCCTCAACAGCACTGGGGTCAGGACGATAGTTG---AGGTGAGAGA---ACAGAAGGCA 41690 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||| || |||| | ||||||||| ||| |||||| ||||||||||| ||| || Sbjct 41689 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 41630 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||||| || | || || |||||||| || | ||||| ||||| |||||| || Sbjct 41629 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 41570 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || || || || || | || | |||| | | ||||| ||| ||| Sbjct 41569 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGGAT 41510 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||| || |||||||| ||||||||| Sbjct 41509 CCATCGAATGGCCCAATCGGCCTTCTTGCGGATGCATGG 41471 >seq96 Length=72333 Score = 132 bits (146), Expect = 9e-26 Identities = 730/1149 (64%), Gaps = 58/1149 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || || || | |||| ||| |||||| |||| || |||||||||||||||||||| Sbjct 49916 ACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATGCCGGTCTTG 49857 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 || || ||| |||||| | |||||| |||| || || Sbjct 49856 AGACCGAGCTT---CCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCA----------- 49811 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | ||| | || || | ||| ||||| ||| |||||| ||||| | | | Sbjct 49810 TGGT-AGGCTCTTT---CAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCT 49755 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||||||||||| | | ||| | || || | ||||||||||||||| | | Sbjct 49754 CGATCAGCGGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGA 49695 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 | |||| ||| |||||| | | |||||| || | || || | || | | | Sbjct 49694 GCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGATA 49635 Query 212850 TGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAGG 212908 | ||| | ||| ||| ||||| |||| ||||| |||| || || Sbjct 49634 CGGTTTTTCATATTGTCGGACCACAGGCCGA-GGTCGACCAGGTCTTTGAGAAGCCATGG 49576 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | ||||| || || | || || | | ||| | ||| || ||||| || Sbjct 49575 GTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGTTGGAGGTGTAAGG 49516 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 || | || ||||||| || |||||||| |||||||| || |||||||| || | Sbjct 49515 TTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATGGGCGCAAG 49456 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCT--GCCCAGTCC 213086 || | |||||| | || ||||||| | ||| | |||| | | ||| ||| Sbjct 49455 TAGTAAACTGTTACGGACACCGTGCTTGGAGAT-------CTCAGCTTTAAGACCA-TCC 49404 Query 213087 CATCTGCCAGACAGGTCC-TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 || | ||||| |||| ||| | || ||||||||||| || | || | ||| || | Sbjct 49403 CAG-TCCCAGA--GGTCGGTCGGCGTT-ACGTTCCACATATCGTATTGAAGGATACCCTG 49348 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 || || |||| ||| |||||||| || |||| ||||||| || || || || Sbjct 49347 AGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGA 49288 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || ||||| | ||| | ||| || || || | |||| | |||||| || Sbjct 49287 TGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTC 49228 Query 213266 TGGGGACGTGAAGGGCA-TCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || || |||||||| || ||| |||| |||| || || ||||||||||| | Sbjct 49227 GGGAGAGTCGAAGGGCAGTCGAAGAGCGA-GGAAAGCATCGGCAAGGCCCTGGACCCCCA 49169 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTT-AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTG 213383 | ||||| | || | | || | | | || ||| || | ||||| ||| Sbjct 49168 CAGCAATGGGGCGATGACGGAAATTGCTTCGTCGTGC-CTCTTCAACCGGGTAGTGGTTC 49110 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA---CATGG-----GCCA 213435 | ||| ||||| |||| | ||| | | | || | |||| ||||| |||| Sbjct 49109 CCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCCA 49050 Query 213436 GGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | |||| ||| | | || | | | | |||||| ||| ||||| || | Sbjct 49049 --AAATCGT-ATTCACCGCGAA-----CAGCATCCACAAAGGTAGGAAGGGCAATAGAAG 48998 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| ||| ||||| || ||||| | | | | ||||| || | ||| || ||||| |||| Sbjct 48997 CCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGT 48938 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 | | ||||| || || ||||||| || || |||| |||| |||||||||| Sbjct 48937 TTGAACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGT 48878 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 | ||||| ||||| || ||||| ||||| | | || || | ||| || | | Sbjct 48877 AAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCATAGCTTCT 48818 Query 213676 TGGCCTTGA 213684 |||||||| Sbjct 48817 GGGCCTTGA 48809 Score = 111 bits (122), Expect = 3e-19 Identities = 143/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| ||||| || || || || |||||||| || |||||||| ||| Sbjct 48562 TCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGC 48503 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCC 213989 |||| |||||| |||||||| || || | |||| || |||||||| || ||||| Sbjct 48502 TCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATATCTGGCA 48443 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 ||||||| | || || | ||| || | |||||||| ||||||||||| || Sbjct 48442 GTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCA 48383 Query 214050 ATATACGAGCCGGAGGC 214066 || || || |||| ||| Sbjct 48382 ATGTAGGATCCGGTGGC 48366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528375219200