Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq96 134 3e-26 seq109 122 2e-22 >seq96 Length=72333 Score = 134 bits (148), Expect = 3e-26 Identities = 409/620 (66%), Gaps = 18/620 (3%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| | || || |||||| ||| || ||||| | || || || || Sbjct 48617 CTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCACGGACTTCTTC 48558 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | || | ||| || | || || | |||||||| || ||||||||||| |||||||| Sbjct 48557 CTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAG 48498 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG 222215 |||| || | || || || ||||||||||||||||| || | ||| ||| ||| | Sbjct 48497 GTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA-CAT-ATCTGGCAGTG 48440 Query 222216 -CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274 |||||| | ||||| | || || | ||||||||| |||||||| || |||| Sbjct 48439 TTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATG 48380 Query 222275 TACGCACCGCCGGCCCTCAGGTTAC--TGGCAGACATG-CCGATACCACCGGC-GTGTTT 222330 || | ||| ||| | || ||| ||| | | | ||||| || || || || ||| Sbjct 48379 TAGGATCCGGTGGCAC---GGATACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTT 48323 Query 222331 CGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGAC 222390 || |||| || ||| |||| || ||||| ||| || || ||| ||||||||| | Sbjct 48322 -GAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCAT 48264 Query 222391 GTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 || | || || || || | ||| || | | | || | ||| || || || ||||| Sbjct 48263 GTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGG 48204 Query 222451 ACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGAT 222510 | ||| || || ||||| | ||||| |||| ||| || || | ||| | | | Sbjct 48203 AGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTCTCAAC 48144 Query 222511 GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGG 222570 || || ||||| || | ||| || ||| ||| | ||| |||| | ||| Sbjct 48143 GTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTT---CAGC 48087 Query 222571 ACCCTTGGAGCTGG---AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 | ||||| | ||| |||||||| || |||| || |||||||| || || || | Sbjct 48086 AACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAATACTG 48027 Query 222628 GAGGTCAAAGTCTCTGCCGT 222647 | || |||||| | | ||| Sbjct 48026 GTAGTTAAAGTCACGGTCGT 48007 >seq109 Length=59048 Score = 122 bits (134), Expect = 2e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || ||||||||||| || ||||| || || |||||||| || || || ||| Sbjct 41538 AGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCA 41597 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || ||||||||| || ||| |||||||| |||||| Sbjct 41598 TCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCT 41657 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | ||||| || || |||| |||||||||||||| || Sbjct 41658 CCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCT 41697 Score = 87.8 bits (96), Expect = 3e-12 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| ||| || || |||||| |||||||||||||| || Sbjct 41078 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41137 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGA-GCAGCATT-TTC-TCAAG 25593 | ||||| || ||| |||| || ||| ||||| | | ||| ||| || Sbjct 41138 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41197 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| ||||| ||||| || ||||| ||||| || || |||||||| || || | Sbjct 41198 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACGT 41257 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| || |||| ||| || || ||||| || |||||||| || Sbjct 41258 TTCAGCAACGAAGTCCAGGTAC-CGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGAT 41316 Query 25713 CGAAAATGTGCACTCTGA 25730 || ||| | ||||| || Sbjct 41317 GGAGAATATTCACTCCGA 41334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840387987200