Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq71 98.7 1e-15 >seq71 Length=104042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139282 CTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTG 139341 |||| ||||| | ||||| |||||||| ||||| || || ||||||||||| ||||| | Sbjct 50977 CTGCGTAGAAGGCCGACATGTTTGCGAGAAGTGCCTGAGCAGTGCAGATGTTGCTGGTAG 50918 Query 139342 CTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGC 139401 | || || | | ||||||||| || | || || || || | | | ||| | || | Sbjct 50917 CCTTCTCGCGACGAATATGCTGTTCACGGGTCTGCAGGGCAAGACGCAAGGCACGGTTTC 50858 Query 139402 CTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTG 139461 | |||||| || ||| || || | |||||| ||||||| ||| | || || | Sbjct 50857 CAAGTCTGTCCTTGGAGACACCGACTATACGGCCAGGAATCTTTCGCTTGTGTTTCTCGG 50798 Query 139462 TTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAA 139513 | |||||||| ||||| || || || || | ||||| || | ||| || Sbjct 50797 TGCAAGCAAAGAAGGCAGCCTGGGGGCCGCCAAAGCCCATGGGGACACCGAA 50746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| |||||||| || || || ||||| || | | || || || || | || | || Sbjct 50373 CATGGCCTCTGCGGCGGCGGTAGCTTCGTCGAGAACGGAGGCATTGGCAACAGGCAGACC 50314 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || | | | || || ||| | |||| | || || | | |||||| || Sbjct 50313 GGTCAGGTCAGAGGTAAGGGTCTGGAAGTTGAGAAGAGACTCGAGACGGCCCTGACTGAT 50254 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||| | || || |||||||| |||||||| | || ||||| || || |||||||| Sbjct 50253 CTCGGGCTGGTAAGGAGTGTAGCTGGTGTACCAGATGGGGTTCTCGAGGACATTTCGCTG 50194 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 ||||| ||||| ||||| ||||||||||| Sbjct 50193 GATGACCGGGGGCACGATGGTACCATAGTATCC 50161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995649757600