Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31]
380 sequences; 22,521,034 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq96 179 4e-40
seq109 102 1e-16
>seq96
Length=72333
Score = 179 bits (198), Expect = 4e-40
Identities = 690/1067 (65%), Gaps = 24/1067 (2%)
Strand=Plus/Plus
Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937
||| | || |||||| | | |||||||||||||||| || | ||||||||||||||||
Sbjct 48826 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 48885
Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997
| || ||| ||||| || |||||||| | || || ||| || ||||| ||||||
Sbjct 48886 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 48945
Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057
|| ||||| | || ||||| | |||||| || ||||| || ||||| || ||
Sbjct 48946 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 49005
Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT---TTTGATTATGAAAAACTTCAT 76114
|||||||| | | ||| ||| | |||| | | |||| || ||||| |||
Sbjct 49006 GCCCTTCCTACCTTTGTGGATGCTG---TTCGCGGTGAATACGATTTTGGCAAACTCCAT 49062
Query 76115 GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174
||| |||| || | ||| || ||| | ||| || |||||||| | || || ||
Sbjct 49063 GAAGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCG 49122
Query 76175 GTTGAGACTGCGCGA--AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232
||||| || ||| ||| ||| | || || | || |||| | |||| || || |
Sbjct 49123 GTTGAAGAGGCACGACGAAG--CAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGG 49180
Query 76233 GTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAG 76291
| || || |||| || | | | | || | | || || || |||||||||
Sbjct 49181 GCCTTGCCGATGCTTTCCTCGCTCTTCGACTGC-CCTTCGACTCTCCCGAAGCCAAGCTT 49239
Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351
|||| | | ||||| || ||| | || || || | || || |||||| |
Sbjct 49240 TTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGCATCGTGTGAACTT 49299
Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT 76411
|| | | | | ||| | || | | ||||||||||| | || || || | |||
Sbjct 49300 GCCAAGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTT 49359
Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470
|| | ||||||| |||| || | || | | | || |||||||||| ||| || |
Sbjct 49360 CAATACGATATGT-GGAACGTAACGCCGACCGACCTCTGGGACTGGGATGGTCTTAAAGC 49418
Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530
||| || | ||| | ||||||||| | | | || || |||||||| |||
Sbjct 49419 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 49478
Query 76531 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589
|||| || | |||||| | || || ||||||||||| ||||| | |||||||||
Sbjct 49479 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTACT 49537
Query 76590 TGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649
| | || || || ||||| |||||||| || |||| |||||
Sbjct 49538 CACGCCGTGTACTTGCTGGCGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAAGACCTGG 49597
Query 76650 AGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCA 76709
| | || || |||||| | ||||||| | | || | | ||||||||||
Sbjct 49598 TCGACCTCGGCCTGTGGTCCGACAATATGAAAAACCGTATCATCGCCGACGGTGGTTCCA 49657
Query 76710 TTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAA 76769
| ||||| ||||| | ||||||| || |||||| ||| ||| || ||||||||||
Sbjct 49658 TCCAAAACATCTCTAACATCCCAGCAGACATCAAGGCTCTGTACAAGACCGTGTGGGAAA 49717
Query 76770 --TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 76827
|| | | | | | || | |||||||| ||||| || ||||||||| ||
Sbjct 49718 TTTCTCAACGTA--CTATTGTTCAGATGGCCGCTGATCGAGGCGCCTTCATTGACCAGTC 49775
Query 76828 TCAAAGTATGAATCTATTCA-TGGAAAG-TCCAACGATGTCCAAGCTCTCTTCTATGCAT 76885
|||| | || || || | ||||| || || ||| ||| || | ||||||
Sbjct 49776 TCAATCCCTCAA--CATCCACTTGAAAGAGCCTACCATGGGAAAGATCACCAGTATGCAC 49833
Query 76886 ATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932
| | ||||| | || ||||| ||||| ||||||||||||||
Sbjct 49834 TTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTACTATCTCCG 49880
>seq109
Length=59048
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||| |||||||| |||| ||||| || |||||||| |||||| ||| || |||
Sbjct 41531 TTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTC 41590
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
| | || | ||| |||||||||| ||||||||||| || || |||||| || |||
Sbjct 41591 GCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAA 41650
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || ||||| || || || || ||| || ||||||
Sbjct 41651 CTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCC 41689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596566766294400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |