Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq96 179 4e-40 seq109 102 1e-16 >seq96 Length=72333 Score = 179 bits (198), Expect = 4e-40 Identities = 690/1067 (65%), Gaps = 24/1067 (2%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || |||||| | | |||||||||||||||| || | |||||||||||||||| Sbjct 48826 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 48885 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | || ||| ||||| || |||||||| | || || ||| || ||||| |||||| Sbjct 48886 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 48945 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || ||||| | || ||||| | |||||| || ||||| || ||||| || || Sbjct 48946 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 49005 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT---TTTGATTATGAAAAACTTCAT 76114 |||||||| | | ||| ||| | |||| | | |||| || ||||| ||| Sbjct 49006 GCCCTTCCTACCTTTGTGGATGCTG---TTCGCGGTGAATACGATTTTGGCAAACTCCAT 49062 Query 76115 GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174 ||| |||| || | ||| || ||| | ||| || |||||||| | || || || Sbjct 49063 GAAGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCG 49122 Query 76175 GTTGAGACTGCGCGA--AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 ||||| || ||| ||| ||| | || || | || |||| | |||| || || | Sbjct 49123 GTTGAAGAGGCACGACGAAG--CAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGG 49180 Query 76233 GTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAG 76291 | || || |||| || | | | | || | | || || || ||||||||| Sbjct 49181 GCCTTGCCGATGCTTTCCTCGCTCTTCGACTGC-CCTTCGACTCTCCCGAAGCCAAGCTT 49239 Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351 |||| | | ||||| || ||| | || || || | || || |||||| | Sbjct 49240 TTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGCATCGTGTGAACTT 49299 Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT 76411 || | | | | ||| | || | | ||||||||||| | || || || | ||| Sbjct 49300 GCCAAGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTT 49359 Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470 || | ||||||| |||| || | || | | | || |||||||||| ||| || | Sbjct 49360 CAATACGATATGT-GGAACGTAACGCCGACCGACCTCTGGGACTGGGATGGTCTTAAAGC 49418 Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530 ||| || | ||| | ||||||||| | | | || || |||||||| ||| Sbjct 49419 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 49478 Query 76531 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589 |||| || | |||||| | || || ||||||||||| ||||| | ||||||||| Sbjct 49479 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTACT 49537 Query 76590 TGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649 | | || || || ||||| |||||||| || |||| ||||| Sbjct 49538 CACGCCGTGTACTTGCTGGCGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAAGACCTGG 49597 Query 76650 AGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCA 76709 | | || || |||||| | ||||||| | | || | | |||||||||| Sbjct 49598 TCGACCTCGGCCTGTGGTCCGACAATATGAAAAACCGTATCATCGCCGACGGTGGTTCCA 49657 Query 76710 TTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAA 76769 | ||||| ||||| | ||||||| || |||||| ||| ||| || |||||||||| Sbjct 49658 TCCAAAACATCTCTAACATCCCAGCAGACATCAAGGCTCTGTACAAGACCGTGTGGGAAA 49717 Query 76770 --TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 76827 || | | | | | || | |||||||| ||||| || ||||||||| || Sbjct 49718 TTTCTCAACGTA--CTATTGTTCAGATGGCCGCTGATCGAGGCGCCTTCATTGACCAGTC 49775 Query 76828 TCAAAGTATGAATCTATTCA-TGGAAAG-TCCAACGATGTCCAAGCTCTCTTCTATGCAT 76885 |||| | || || || | ||||| || || ||| ||| || | |||||| Sbjct 49776 TCAATCCCTCAA--CATCCACTTGAAAGAGCCTACCATGGGAAAGATCACCAGTATGCAC 49833 Query 76886 ATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | | ||||| | || ||||| ||||| |||||||||||||| Sbjct 49834 TTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTACTATCTCCG 49880 >seq109 Length=59048 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||||||| |||| ||||| || |||||||| |||||| ||| || ||| Sbjct 41531 TTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTC 41590 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| |||||||||| ||||||||||| || || |||||| || ||| Sbjct 41591 GCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAA 41650 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || || || || ||| || |||||| Sbjct 41651 CTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCC 41689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566766294400