Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq119 307 1e-78 seq4 159 5e-34 seq39 149 8e-31 seq13 138 1e-27 seq1 123 3e-23 seq5 104 3e-17 seq22 100 4e-16 >seq119 Length=46604 Score = 307 bits (340), Expect = 1e-78 Identities = 573/835 (69%), Gaps = 15/835 (2%) Strand=Plus/Plus Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111 ||| || | ||||| || || || | ||||| || || ||||| || || ||||||||| Sbjct 39066 AATGCTCGTGCTCTCCGCCGTCTCCGCACTGCCTGCGAGCGTGCTAAGCGTACTCTCTCT 39125 Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171 ||| | || || || ||||||||||||| | | ||| || |||||||||| || Sbjct 39126 TCTGCTGCCCAGACCTCCATTGAGATTGATTCTCTCTATGAGGGTGTTGACTTCTACACC 39185 Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231 | || |||||||| ||||| || ||| | | || | || | |||||| Sbjct 39186 TCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACTATGGAG 39245 Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291 ||||| || | ||| || |||||||| ||||| || ||||| || | || |||||| Sbjct 39246 CCTGTCGAGCGAGTCCTCCGTGACGCCAAGATCGACAAGTCCTCCGTCCACGAGATTGTC 39305 Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAAT 196351 || || || || || || ||||| || ||||| || ||||| | || ||||||||| Sbjct 39306 CTCGTCGGTGGTTCTACTCGTATCCCCAAGATCCAGAAGATGGTCTCCGACTTCTTCAAC 39365 Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTT 196411 || || |||||| | |||||||| |||||||| ||||| || ||||| ||||| Sbjct 39366 GGCAAGGAGCCAAACAAGTCCATCAACCCCGATGAAGCCGTTGCCTACGGTGCTGCCGTC 39425 Query 196412 CAGGCTGCTATTCTCTCAGGTGTTGACA-ATAAT-AACGTCCA------AGATCTTCTGC 196463 ||||| || |||||||| || ||||| | | | ||||| ||||| || | Sbjct 39426 CAGGCCGCCATTCTCTCCGG---TGACACCTCCTCCAAGTCCACCAACGAGATC--CTCC 39480 Query 196464 TACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAA 196523 | || ||||| || ||| | || || ||| | || || || || ||||| |||||| Sbjct 39481 TGCTCGATGTCGCTCCCCTCTCTCTCGGTATCGAGACTGCTGGCGGTGTCATGACTCCTC 39540 Query 196524 TTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTT-TCAACGTATTCC 196582 | || | | ||||| || || || || ||||| | || |||| || || | || Sbjct 39541 TCATCAAGCGCAACACCACCATCCCTACCAAGAA-GTCTGAGACTTTCTCCACCTTCTCT 39599 Query 196583 GATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGAT 196642 || || || || ||||| || || || | || || || || |||| | ||||| Sbjct 39600 GACAACCAGCCTGGTGTCTTGATCCAGGTCTTCGAGGGTGAGCGTGCCCGCACCAAGGAC 39659 Query 196643 AACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCA 196702 ||| | | || || | ||||| | || || || ||| |||| ||| | |||||||| Sbjct 39660 AACAACTTGCTCGGCAAGTTCGAGCTCACTGGTATCCCACCTGCCCCCCGTGGTGTTCCT 39719 Query 196703 CAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGAC 196762 ||||| | || ||||||| | || || || || ||| | |||||| | ||| || Sbjct 39720 CAGATCGAAGTCACCTTCGATGTTGATGCCAACGGTATTATGAACGTCTCTGCTCTCGAG 39779 Query 196763 AAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAG 196822 |||| |||| || | | |||||||| || ||||| |||||||| || || || ||| Sbjct 39780 AAGGGCACTGGAAAGACCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTGTCCAAG 39839 Query 196823 GAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 ||||| || || |||||| || || || || ||||||| || || ||||||| Sbjct 39840 GAGGAGATCGAGCGTATGCTTGCTGAGGCCGAGAAGTACAAGGCCGAGGACGAGG 39894 Score = 300 bits (332), Expect = 2e-76 Identities = 479/685 (70%), Gaps = 7/685 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||||||||| || || || ||||| || || ||| | | | |||| || | || Sbjct 38252 GGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTGAA 38311 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || || || |||||||| || ||||| || | ||||||||| ||||| | Sbjct 38312 ATCATCGCCAACGATCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACACC 38371 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || |||||| |||||||||||||||| || ||| || |||||||||||||| || ||| Sbjct 38372 GAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCGTC 38431 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || || || |||||||| ||||| |||||||| || | ||||| | ||| || Sbjct 38432 TTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAACGACGCCGAGGTCCAGGCCGACATG 38491 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCG--GTGTGGCTGATAAGCCTATGATTAATGTTG 195602 ||| ||| | | | ||||| | | | | ||| ||||| || | | || | Sbjct 38492 AAGCACTTCCCCTTCAAGGTTGT-CGAGAAGAGCGGC----AAGCCCATCGTCCAGGTCG 38546 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || ||| |||| || || | || || ||||| || || ||||| | | | Sbjct 38547 AGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCTCACCA 38606 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| ||||| || || | | | ||| || || || | || || | |||| Sbjct 38607 AGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 38666 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||| ||||||| || || || || || || || |||||||| | | ||||| | Sbjct 38667 TCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCATTGCCG 38726 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 38727 GTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGGTCTCG 38786 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| |||| || || || | ||||| ||||||||||||||||| || | Sbjct 38787 ACAAGAAGGCCGACGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACCTTCG 38846 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 ||||||| || || | || |||| ||||| |||||||| ||| | ||||| ||||| | Sbjct 38847 ATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGGTGACA 38906 Query 195963 CTCATCTAGGTGGTGAAGATTTCGA 195987 |||| | |||||||| || || || Sbjct 38907 CTCACTTGGGTGGTGAGGACTTTGA 38931 >seq4 Length=489520 Score = 159 bits (176), Expect = 5e-34 Identities = 329/489 (67%), Gaps = 3/489 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || ||||||| || ||||| |||| ||| ||| Sbjct 214739 ACTGTCCCAGCCTACTTCAACGACAACCAGAGACAGGCCACCAAGGATGCTGGTGCCATT 214680 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| ||| | || ||||| || || || || || || ||||| || ||| Sbjct 214679 GCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCCACTGCTGCCGCCATTGCCTACGGT 214620 Query 195839 CTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | ||| ||| | | ||||| | |||| ||||||||||||||| Sbjct 214619 CTCGGCTCTGGAAAGTCCGAGAAGGAGCGCAATGTCCTCATCTACGATCTCGGTGGTGGT 214560 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | || ||| | ||| || ||||| ||||| Sbjct 214559 ACTTTCGATGTCTCCCTCCTCAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACTGCC 214500 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 |||||||| ||||| |||||| | |||||||| | || ||| || || | Sbjct 214499 GGTGATACCCATCTTGGTGGTCAGGATTTCGACACCAACCTCCTCGACCACTTCAAGAAG 214440 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 ||||| || |||| ||||| ||| | || || | | || || || || | || Sbjct 214439 GAGTTTACCCGCAAGACCAAGAAGGATCTCTCCGGTGACTCCAGAGCCCTCCGAAGACTC 214380 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAG 196135 | ||||| || || ||||| || || ||||| || | |||| || | || ||| Sbjct 214379 CGCACTGCTTGCGAGCGTGCTAAGCGTACTCTTTCCAGCGCTACTCAGACTACCGTCGAG 214320 Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195 ||||| || | || ||||| |||||| || | || || ||||| ||||| || Sbjct 214319 ATTGACTCTCTCTTCGACGGTGAGGACTTCAATGCCCAGATCACTCGTGCTCGTTTCGAG 214260 Query 196196 GAGTTAAAC 196204 || || ||| Sbjct 214259 GACTTGAAC 214251 >seq39 Length=193750 Score = 149 bits (164), Expect = 8e-31 Identities = 251/357 (70%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || | || | ||||| ||| |||||||||||| | || || | | | Sbjct 145570 CCCGAGGAGGTCTCCGCCATGGTTTTGGGTAAGATGAAGGACATCGCCGAGAAGTACCTC 145511 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | ||||| | |||| || || ||||| || || ||||||| ||| || || Sbjct 145510 GGAGAGACTGTCAGCCATGCTGTCGTCACTGTCCCCGCCTACTTCAATGACAACCAGAGA 145451 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGA 195810 ||||| ||||||||||||| | | || || ||||| ||| ||| | | || | || || Sbjct 145450 CAGGCCACAAAGGACGCTGGTACCATCGCCGGTCTGAAC-GTCATCCGTGTTGTTAACGA 145392 Query 195811 ACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT 195870 ||||| || || || ||||| || ||||| |||| || ||||| | | || Sbjct 145391 GCCAACTGCCGCAGCTATTGCCTACGGTCTCGACATGACTGGTGACGA-GCGCCAGATC- 145334 Query 195871 ATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGG 195930 || | ||| ||||||||||||||||| || |||||||| || ||| ||||| || Sbjct 145333 ATCG-TCTACGATCTCGGTGGTGGTACTTTCGATGTCTCTCTCCTCTCCATTGACAAGGG 145275 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || |||||| |||||||| ||||| | ||||||||||||||||| Sbjct 145274 TGCCTTCGAGGTCTTGGCTACCGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGA 145218 >seq13 Length=341173 Score = 138 bits (152), Expect = 1e-27 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || ||||||||||||||||| ||||| ||||| || || ||| |||| || Sbjct 273372 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACC 273313 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| ||||| || || || ||||| || || || ||||| || ||| Sbjct 273312 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGAAAA 273253 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || || || || |||||| | || |||||| | || |||||| || || ||| Sbjct 273252 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCAC 273193 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || || || | || || ||||| ||||| Sbjct 273192 CTCGTCCTTCGTCTCCGTGGTGGCATGCAA 273163 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || ||||||||||| || || || || || Sbjct 272870 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 272811 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| | ||||| || || |||||||| ||||| || || ||| Sbjct 272810 GACACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAG 272751 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || |||||||| ||||||||||| || || || || || | ||||| ||| Sbjct 272750 CAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAAC 272691 Query 172042 GTTCAAAAGGAG 172053 | || |||||| Sbjct 272690 ATCCAGAAGGAG 272679 >seq1 Length=883280 Score = 123 bits (136), Expect = 3e-23 Identities = 197/280 (70%), Gaps = 16/280 (6%) Strand=Plus/Plus Query 195713 GTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCT 195772 || || ||||| ||||||||||||| || || ||||| ||||| || ||||| |||| | Sbjct 765750 GTCGTCACTGTTCCTGCTTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCTGGT 765809 Query 195773 GCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCT 195832 ||||| ||||| ||| ||| | | |||| || || || || ||||| |||| Sbjct 765810 CAAATTGCTGGTCTTAACGTTCTCCGTGTCGTCAACGAGCCCACCGCTGCTGCTCTTGCC 765869 Query 195833 TATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT-ATTG--ATCTTTGATCTCGGT 195889 || ||||| || ||| | ||||| ||| |||| ||| ||||| ||| Sbjct 765870 TACGGTCTCGAGAAGGAGCAGGAC---------CGTGTCATTGCTGTCTACGATCTTGGT 765920 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATT--GAAGGTGGTATATTCGAAGTAAAGG 195947 |||||||| || ||| |||| ||||| | ||| |||| ||| | ||||| || ||| Sbjct 765921 GGTGGTACTTTCGATATCTCCATTCTCGAGATTCAGAAG--GGTGTGTTCGAGGTCAAGT 765978 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || || ||||| || |||||||||||||| Sbjct 765979 CCACCAACGGAGACACCCATCTCGGAGGTGAAGATTTCGA 766018 >seq5 Length=454596 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||| ||||| || ||||| || || ||||| || || || || || || ||||||||||| Sbjct 18662 AGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGA 18721 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || ||||| || ||||||| ||| |||| |||||||| || || ||||| || || Sbjct 18722 GGACGGCCGTACTCTTTCTGATTATAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCT 18781 Query 172074 AAGGCTTCGGGGTGGTG 172090 | || || ||||||| Sbjct 18782 CCGTCTCCGTGGTGGTG 18798 >seq22 Length=270490 Score = 100 bits (110), Expect = 4e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 198564 CTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAA 198623 ||||||| || | || || || |||||||| ||||| || | ||| | || || ||| Sbjct 80949 CTTCTCGTTGGACCTCCCGGAACCGGTAAAACTCTTCTTGCCAGAGCTGTTGCTGGAGAA 81008 Query 198624 TCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTG 198681 | | || ||||| ||| || || || |||||| | |||||| | ||| |||| Sbjct 81009 GCAGGCGTTCCCTTCTTCTACATGTCTG-GCTCCGAGTTCGA-CGAGATATACGTCGGTG 81066 Query 198682 TTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCA 198741 |||| |||||||| ||||| ||||| |||| || || |||| || |||| ||||| Sbjct 81067 TTGGAGCTAAGCGTGTCCGTGAACTGTTTGCCCAGGCCCGTGCCAAAGCACCAGCTATCA 81126 Query 198742 TCTTCATTGATGAGATTGACGCTGTTGG 198769 ||||||| ||||| |||| || |||| Sbjct 81127 TCTTCATCGATGAACTTGATGCCATTGG 81154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859275153600