Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq96 105 2e-17 seq47 91.5 4e-13 >seq96 Length=72333 Score = 105 bits (116), Expect = 2e-17 Identities = 356/554 (64%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 || || ||||| || || || | ||| || ||||||| || ||||||||| || Sbjct 48553 CCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAG 48494 Query 156039 ATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 |||||||| ||| | | | ||||||||||| || ||||| | ||||| || ||| Sbjct 48493 ATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTG 48434 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 || |||| ||||| || | || || ||||| | ||| |||||||| ||| | || Sbjct 48433 AACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGAT 48374 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 || | | || | | || | | || || || || || | || ||||| | Sbjct 48373 CCGGTGGCACGGATACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAA 48314 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || || ||| | || | | | |||||||| ||| || || | ||| | || Sbjct 48313 GCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGG 48254 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 |||| ||| | ||| || | || ||||| || ||||| || || || | ||||| Sbjct 48253 AAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGG 48194 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCG 156395 | || || || | ||||| || |||||| || | | ||||||| | ||| Sbjct 48193 GTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG 48134 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 || |||| || | || | ||| ||||||||| || || || ||| | || | Sbjct 48133 TGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTG 48074 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCA 156515 |||| || ||||||| | ||| || || || || |||||||| | | ||| ||| Sbjct 48073 GTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCA 48014 Query 156516 CGGTTGTAATCAAT 156529 |||| ||| |||| Sbjct 48013 CGGTCGTACACAAT 48000 >seq47 Length=178441 Score = 91.5 bits (100), Expect = 4e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||||||||| | ||||| ||||| || ||||| | ||| | |||||| Sbjct 110658 CGCTGGATATAACCAGTCTCCGCAGTTTTGACAGCAGTGTCAATCAAACCTTCGCGACCA 110717 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||||| |||||||| | || ||| || || | | | | ||| |||| ||| Sbjct 110718 GCCATAGCGTGGAAGAAGAATTCGGTGGGTGTCAGTCCACGGAGATACGAGTTCTCGACG 110777 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || ||||| | || || |||| || || || || ||||||| |||| | | | Sbjct 110778 AATCCACGAGATTCTGGAGAATAATCATCTTTTGTGAAATGTGGCAATGTCCGATATTTA 110837 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | ||| | || ||||||||||| ||||| ||| || || | || ||||||| Sbjct 110838 AATCCGAAAGGAATACGCTTTCCTTCAACTGACTGTTGACCGACTACCGCTGTCATCTGA 110897 Query 302836 GAAATATT 302843 ||||| || Sbjct 110898 GAAATGTT 110905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810434088060