Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 143 2e-29 >seq13 Length=341173 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || || ||||||||| ||| | Sbjct 272870 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 272811 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| || || ||||||||| ||||| ||||| || || || || || Sbjct 272810 GACACGATAGACAACGTCAAGAC-AAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCA 272752 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || |||||||| ||||| | | |||| |||||||| Sbjct 272751 GCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAA 272692 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || | || |||||| |||| ||||| || || Sbjct 272691 CATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 272644 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 ||||| || ||||| || || || || || || || ||| ||| |||||| | || ||| Sbjct 273083 AAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGACAAC 273024 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | || || || |||||| ||||| || || || ||||| || || |||||| | ||||| Sbjct 273023 GTCAAGACCAA-GATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTCATCTT 272965 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 ||| || |||||||| ||||| | | | | || || || ||||| ||||||||||| Sbjct 272964 TGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGGAATC 272905 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||| | || | || |||| |||||| Sbjct 272904 AACTCTCCACCTTGTCCTTCGTCTGCGTGGAGGC 272871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895462986400