Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 125 7e-24 >seq13 Length=341173 Score = 125 bits (138), Expect = 7e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | ||| ||| ||||| || || |||||| || ||| || || ||||| | Sbjct 272665 AAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCG--TCCTCAA 272722 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | ||||| ||||||||||| || || || ||||||||||| || Sbjct 272723 GCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGA 272782 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||||| | || | ||||||| ||| || || || | |||| ||||||| Sbjct 272783 TCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATAGTTTTGC 272842 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | ||||| || || ||||| ||||||||| || Sbjct 272843 CCGTCAGTGTCTTGACGAAGATCTGCATGCCT 272874 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||| || || || | ||||| || |||||||| ||||||||||| ||||| Sbjct 272943 GTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTT 273002 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| ||| || || || | |||| Sbjct 273003 GTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGAT 273062 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||||||||||||||| |||| Sbjct 273063 GGTCTTGCCGGTCAGAGTTTTCACGA 273088 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| ||| | ||| |||||||||||| || || Sbjct 273199 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCC 273258 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 273259 TGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 273318 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | |||| |||||| ||| |||||| |||| ||||| || |||||||| Sbjct 273319 GACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418503751200