Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq96 129 8e-24 seq109 105 1e-16 >seq96 Length=72333 Score = 129 bits (142), Expect = 8e-24 Identities = 202/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | | |||||| || | ||||| ||||| |||||||| || |||| Sbjct 48173 CATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTTCAATGCCGGAACCCCGCA 48232 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||| | | || ||||| || | |||||||||| || ||||| || ||||| Sbjct 48233 GCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATCTA 48292 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| || ||| || || | || || ||| | || || || |||||| || || Sbjct 48293 CGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAACGT 48352 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | || ||| | || ||||| | || || ||||||||| |||||||| | Sbjct 48353 CCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGAAT 48412 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||||||||||| || || ||| |||| || | || ||||||||| Sbjct 48413 CGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGTCGACCAG 48461 >seq109 Length=59048 Score = 105 bits (116), Expect = 1e-16 Identities = 203/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| | |||| | || || || || ||||| ||||| ||| | |||| Sbjct 41077 GATCTGGCAAATGTACAAGAAAG-CTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACC 41135 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || || | | ||||| ||| | ||||| || || |||||| Sbjct 41136 TCTCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCT 41195 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| | ||||| || ||||||| ||||||||||| ||||||||| | Sbjct 41196 CCCACGTCTTGGCCTTCTT-CGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAA 41254 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | || || ||||| | || || || || | || || || ||||||||| Sbjct 41255 CGTTTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATG 41314 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || || || ||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct 41315 ATGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 41370 Score = 87.8 bits (96), Expect = 3e-11 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || || ||| |||||| | ||||| | | ||| | || || || Sbjct 41744 ATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCC 41803 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||| || | ||||||||||||||||||||| || |||||||| | | Sbjct 41804 CTTCTCGGCATGAATGCTAA-GCTCATGTGCCAGTACATTGAGTTC-GTCGCCGATAGGC 41861 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| || || || | ||||| |||| || ||||||| ||| | ||| Sbjct 41862 TTCTCGTTGCTCTTGGTAACA-AGAAGTTCTACAACACCACCAACCCCTTCGACTTCATG 41920 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 || ||||| |||| |||||||||||||| |||||| || | ||| || ||| Sbjct 41921 GACAATATCTCCCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAG 41980 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 || || || |||| |||| Sbjct 41981 AAAGCTGGTGTCATGGCCA 41999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177774548301560