Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13 159 3e-34 >seq13 Length=341173 Score = 159 bits (176), Expect = 3e-34 Identities = 183/243 (75%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 35495 ATCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGA 35554 ||||||| ||| || || || |||| || ||||||||| ||||| |||||||| || Sbjct 272632 ATCATCTAGTTA---CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGG 272688 Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 ||||| ||||||| || || || |||| || ||||| || || ||||| || | ||| Sbjct 272689 ATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGC 272748 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGT 35673 |||||||| | |||| | ||||||||| ||||||| ||| | |||| | | ||| Sbjct 272749 TGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCTATCGT 272807 Query 35674 GTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTG 35733 |||||| ||||| || |||| ||||| ||||| ||||||| || || || || ||||| Sbjct 272808 GTCGCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTG 272867 Query 35734 CAT 35736 ||| Sbjct 272868 CAT 272870 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| |||| | ||| || |||| || ||||| || || Sbjct 273200 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCT 273259 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 273260 GCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTG 273319 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | |||| | | |||||||| || |||||||| | ||||| || || || || Sbjct 273320 A-CGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791458730400