Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20 91.5 1e-13 >seq20 Length=282445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 226/343 (66%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA------GGTTC---T 19602 |||||||| || | ||||||||||| || | || || |||||| ||| | | Sbjct 150628 CACATTATCATTTTTGATGAATTGGATGCTGTTTGCAAACAAAGAGGCAGCGGTGCCGGT 150569 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| || || || || | ||||||||| ||||| || ||||| | ||||||||| Sbjct 150568 GGTGGAACGGGTGTTGGCGATAGTGTTGTCAACCAACTTCTATCAAAGCTCGACGGTGTT 150509 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 |||| || || ||||| | |||| || ||||| || || |||| | || || Sbjct 150508 GACCAGCTAAACAATATCCTCCTTATAGGAATGACAAACCGAATGGACATGATTGATGAT 150449 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| || | || || ||||| |||| | | || ||||| | | || |||||| | Sbjct 150448 GCCCTACTGCGTCCAGGTCGACTGGAGGTCCATATGGAAATATCCCTCCCAGATGAACAT 150389 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 || || | |||| || || || ||||| | |||||| | || || || | | Sbjct 150388 GGCCGGGCTCAAATATTGAAAATCCATACCCAGAAAATGCGAGAGAACGACGTTATGGAC 150329 Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 || || ||||| | || ||||||| |||||| |||| Sbjct 150328 CGAGACGTGGATCTCAAGGAGCTTGCAGCACTTACCAAGAACT 150286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454159281900