Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq96 149 8e-31 seq109 98.7 1e-15 >seq96 Length=72333 Score = 149 bits (164), Expect = 8e-31 Identities = 680/1065 (64%), Gaps = 20/1065 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| ||||||||||| || | ||||| | | |||||| | | Sbjct 49880 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 49821 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | ||| ||| || || || || | || ||| | |||| |||||||||||| Sbjct 49820 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 49761 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGC 110540 || || | || ||||| | || | | | || | ||||||||| || || Sbjct 49760 GCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGA--AATTTCCCACACGGTCT 49703 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| |||||| || ||||||| | ||||| || ||||||||||| || | Sbjct 49702 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 49643 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | || | | ||||||| | |||||| || || | | ||||| |||| | Sbjct 49642 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 49583 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | |||||||| ||||| || || || | | ||||||||| | | Sbjct 49582 GCCATGGGTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGTTGGAGG 49523 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTGGCATT 110779 |||| ||||||||||| || || | |||||| | || |||| ||| |||||||| Sbjct 49522 TGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATG 49464 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || | | | ||||||||| | ||| | || ||| | || ||| ||||| Sbjct 49463 GGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCATCC 49404 Query 110840 CAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 ||||| || | | | || | || |||| |||| || | ||||| | || || || Sbjct 49403 CAGTCCCAGAGGTCGGTCGGCGTTACGTTCC-ACATATCGTATTGAAGGATACCCTGAGA 49345 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 110958 | ||||||||||| ||| || | ||| | | | | || | |||||| || Sbjct 49344 AACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGATGC 49285 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 || | || || || | ||| || ||||| | | |||| ||||||||| Sbjct 49284 GGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTCGGG 49225 Query 111019 TGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 || || || | | || | | | | || |||| || || || || || |||| | Sbjct 49224 AGAGTCGAAGG-GCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCCACAG 49166 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 |||| || | || || | ||| ||| ||| || ||||| || || || | Sbjct 49165 CAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTTCCC 49108 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 |||||||| || ||| | ||| || ||| | || |||| |||||| ||||| || | Sbjct 49107 GTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCCAAA 49048 Query 111196 ATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 ||| | | |||| | ||| ||| | | |||||||| || || ||||| || Sbjct 49047 ATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAAGTT 48991 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||||| || |||||| | ||||| || | ||||| || || | ||| ||||| Sbjct 48990 ACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGAACT 48931 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | |||||||| || ||||| |||||| | ||||||||| ||||| Sbjct 48930 ACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAGCAT 48871 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||| | || ||||||||||| | | |||||| || | ||| Sbjct 48870 AAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 48826 >seq109 Length=59048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || || || ||||| || ||||| || |||||| || || Sbjct 41689 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 41630 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||||| ||| | || | | ||| || ||| |||||| || Sbjct 41629 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 41570 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 |||||| || ||||| |||| |||||| | ||||| | | | ||| | | | Sbjct 41569 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGGAT 41510 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | |||||||| Sbjct 41509 CCATCGAATGGCCCAATCGGCCTTCTT 41483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029016848000