Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq96 127 3e-24 seq109 122 1e-22 >seq96 Length=72333 Score = 127 bits (140), Expect = 3e-24 Identities = 401/617 (65%), Gaps = 11/617 (2%) Strand=Plus/Minus Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 ||||| ||| | || || |||||||| || | | || | | || || |||| || Sbjct 48717 ACTTTTCGTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCAT 48658 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| || | ||| | ||| || ||||| ||||||||||| | || || Sbjct 48657 TAGGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAG 48598 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| | ||| |||| ||||| || || ||||||| | || || || || | Sbjct 48597 TCCACAAGGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGA 48538 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 || | || || | |||||| |||||||| || |||||||| | || | | | ||| Sbjct 48537 GGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGG-CACCT 48479 Query 119179 TACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 |||| ||| |||||| ||||| || |||||| ||| || |||||||||| Sbjct 48478 G--GACGCTTGTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCA 48421 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | || | ||| || | ||| ||| || || || ||| || |||| | || Sbjct 48420 TGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGA 48361 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||| || | ||| || || || || |||||| || || || | | | Sbjct 48360 TACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCA 48301 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | || ||||||| || ||||| ||| |||| | | |||||||||||| | || Sbjct 48300 GTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCA 48241 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCT 119471 |||| ||| || || || || ||||||||||| || | || ||| |||| || | Sbjct 48240 TTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTC- 48182 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 |||||||| | ||| || || | || || ||| || ||||| ||||||| Sbjct 48181 TGGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACG 48122 Query 119532 GAGACCCGCATAAACAT 119548 | || ||||| | ||| Sbjct 48121 GCAACTCGCATTATCAT 48105 Score = 127 bits (140), Expect = 3e-24 Identities = 679/1069 (64%), Gaps = 28/1069 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || |||||||| || | ||||| || Sbjct 49880 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 49821 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | ||| || || || | || ||| | ||| || || || |||||| Sbjct 49820 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 49761 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || ||||| || ||||| | || || || | | | || |||||||||| ||| Sbjct 49760 GCGCCTCGATCAGCGGCCATCTGAA-CA-ATAGTACGTTGAGAAATTTCCCACACGGTCT 49703 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||| || ||| || || ||||||| | ||| ||||||||||| ||||| | Sbjct 49702 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 49643 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || || | | ||||||| | ||||| || || | | || || | | | Sbjct 49642 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 49583 Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 118191 | ||| | ||||||| ||||| || || || || | | || ||||| |||| Sbjct 49582 GCCATGGGT--TGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 49526 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGC 118250 ||||| || ||||||||||| ||| | |||||| | | ||| || ||| || ||| Sbjct 49525 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 49467 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | || | |||||||||| ||| | | || | || ||| | Sbjct 49466 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 49407 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACCT 118367 |||||||| || || | ||| | | | ||||||||| | || |||||||| Sbjct 49406 TCCCAGTCCCAG---AGGTCGGTCGGCGTTACGTTCCACATATCGTATTGAAGGATACCC 49350 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427 || || | || || ||||| | | ||||| || || |||| || | ||| | Sbjct 49349 TGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACAC 49290 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 || | || || || || | || || || || | | |||| |||||| Sbjct 49289 GATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCT 49230 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| || || || | ||||| | || |||| || || || ||||| || Sbjct 49229 TCGGGAGAGTCGAAGGGCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCC 49170 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAAT 118605 | |||| |||||||| | | ||| |||| || || || || || || | Sbjct 49169 ACAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGT 49112 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 118665 ||| || || | || || | ||| || || |||| |||| |||||| || || Sbjct 49111 TCCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGC 49052 Query 118666 CGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 | |||| | || |||| | ||| ||| | |||||||||| || || |||| Sbjct 49051 CAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCA 48995 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 ||||| || | |||||| | ||||| || | ||||| ||||| | ||||| Sbjct 48994 AGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTG 48935 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842 |||| || || || | |||||||||||| |||| ||| || | ||||||||||| Sbjct 48934 AACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAA 48875 Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||| | || | || |||||||| |||| || |||||| || | ||| Sbjct 48874 GCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 48826 >seq109 Length=59048 Score = 122 bits (134), Expect = 1e-22 Identities = 295/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | | |||||| ||||| Sbjct 41976 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCATG 41917 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | ||| | || | || | |||| ||| || | Sbjct 41916 AAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTA-CCAAGAGCAACGAGAAGCCT 41858 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| |||| || | ||||| |||| ||| ||| Sbjct 41857 ATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCACA 41798 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| ||| ||| || ||||| | |||||| | Sbjct 41797 GGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATGGCCTC 41738 Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || | | | |||| | || || | || ||| || |||||| || Sbjct 41737 AACAGCACTGGGGTCAGGACGATAGTTGAGGTGAGA---GAACAGAAGGCAGGCAAAATC 41681 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || || |||||||||||||||||||| || |||||| || || |||||||| Sbjct 41680 AGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAG 41621 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||||| |||||| || | || ||||| |||||| || ||||| || Sbjct 41620 ACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGAC 41561 Query 130144 ACACGCGAACGCAAAGAGACGCT 130166 || || |||| || |||| Sbjct 41560 GGCAGCAAAGGCAACAAGGCGCT 41538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432262432800