Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq96 152 6e-32 seq109 104 3e-17 seq97 91.5 2e-13 >seq96 Length=72333 Score = 152 bits (168), Expect = 6e-32 Identities = 470/717 (66%), Gaps = 14/717 (2%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || |||||| || | || || |||||||| | || | ||||||||||| || Sbjct 48826 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 48885 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 |||| |||| |||||| ||||||||||| | ||| ||| ||||| || || || Sbjct 48886 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 48945 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 105067 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 48946 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 49005 Query 105068 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 105126 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 49006 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 49064 Query 105127 AGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 105186 ||| || | || || |||| | |||||| | ||||| | || ||||| || Sbjct 49065 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 49124 Query 105187 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCT 105246 ||| || || | ||| | | || || || |||| | | || || ||||| || Sbjct 49125 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 49184 Query 105247 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 105306 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 49185 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 49244 Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAG 105365 | | || || |||||| | || || || || |||| || | || | || Sbjct 49245 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 49303 Query 105366 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAAT 105425 |||| ||||||||||| ||| ||||||||||| | ||| || || | ||||||| Sbjct 49304 AGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTTCAAT 49363 Query 105426 TTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAA 105481 ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 49364 ACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGCT 49419 Query 105482 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCC 105541 ||| || | ||| | ||||||||| | || | || || |||||||| ||| | Sbjct 49420 GAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAGC 49479 Query 105542 ACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 49480 ACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 49535 Score = 143 bits (158), Expect = 3e-29 Identities = 409/626 (65%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| | ||||| || ||| ||||||| || || || ||| |||| || Sbjct 48096 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 48155 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | || |||||| | |||||||| | || |||| || || | || || ||||| Sbjct 48156 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 48214 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || || || || |||||| | |||||||| || | || |||||||| Sbjct 48215 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 48274 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 48275 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 48334 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | || |||| | | | |||| ||| ||| || || || Sbjct 48335 AGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAA 48394 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || || | || |||||||| || || ||| ||| || | ||||| Sbjct 48395 CGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGT 48454 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | || | ||| ||||| | || | | || |||| || ||||||||||| Sbjct 48455 CGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTTGCTATCTACCTGGAGCCATGGCA 48511 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| |||||| | ||||||||||| | || ||||| || | || || | || Sbjct 48512 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 48571 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| ||| Sbjct 48572 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 48631 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 |||| ||||| | || || || || | |||| ||||| | | |||| | || || Sbjct 48632 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 48691 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGT 104840 ||||| || || | ||| ||||| Sbjct 48692 AGAGTTCGAGGCATTGTACGAAAAGT 48717 >seq109 Length=59048 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 94792 |||||| || || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 41467 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 41522 Query 94793 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 41523 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 41582 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 41583 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 41642 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 41643 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 41688 >seq97 Length=71526 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || || | | ||| || | ||| ||| |||||||||||| | Sbjct 39540 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 39485 Query 9674 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 39484 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 39427 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 | ||| ||||| |||| ||||| |||| || || || ||||| | ||| Sbjct 39426 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 39367 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 9843 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 39366 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 39308 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 39307 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 39248 Query 9904 GGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || || || || Sbjct 39247 AGCTCCTCGAGGTATTTTCGCACC 39224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258029511200