Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq119 187 8e-42 seq47 138 3e-27 seq13 120 9e-22 seq5 104 7e-17 seq104 95.1 4e-14 >seq119 Length=46604 Score = 187 bits (206), Expect = 8e-42 Identities = 486/734 (66%), Gaps = 14/734 (2%) Strand=Plus/Plus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| |||||||| ||||| || || || || || | | | | | |||| || | | Sbjct 38250 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTG 38309 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| || || || ||||| || ||| | || || || || | |||||| || || || | Sbjct 38310 AAATCATCGCCAACGATCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACA 38369 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | |||||| | ||||| ||| | ||||| || || | || || || | || || | Sbjct 38370 CCGAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCG 38429 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AAATCTACACAATC 349437 | || ||||||||||| || ||||| | ||||| | ||| | || || | Sbjct 38430 TCTTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAAC-GACGCCGAGGTC----CAGGC 38484 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | ||||| | | |||| | | || || || | | Sbjct 38485 CGACATGAAGCACTTCCCCTTCAAGGTTGT-CGAGAAGA--GCGGCAAGCCCATCGTCCA 38541 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || | || || || || || ||||| || || ||||| | Sbjct 38542 GGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCT 38601 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | || || || ||| | |||| || || | | ||||| || Sbjct 38602 CACCAAGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCAT 38661 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || || |||||||| || || || || || || ||| Sbjct 38662 CACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCAT 38721 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || || || | || || || || ||||||||||| || ||||| || || Sbjct 38722 TGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGG 38781 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | ||| || || |||| || || ||| | ||||||||||| Sbjct 38782 TCTCGACAAGAAGGCCGACGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTAC 38841 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || | |||||||| || || ||||| || | ||||| || Sbjct 38842 CTTCGATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGG 38901 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || ||||| || |||||||| || || || || || Sbjct 38902 TGACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGA 38961 Query 349918 ATTTAAGCGTCAAG 349931 ||| ||||| |||| Sbjct 38962 ATTCAAGCG-CAAG 38974 >seq47 Length=178441 Score = 138 bits (152), Expect = 3e-27 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 378191 TAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAG 378250 ||||||| | ||||| | ||| || | ||| ||| ||||||||||| | || Sbjct 110623 TAACCATGACCTCTTCCAGTGCCTTGACAAGCTTTCGCTGGATATAACCAGTCTCCGCAG 110682 Query 378251 TTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAG 378310 |||| || ||||| ||||| ||||| | |||||| |||| || |||||||| ||||| | Sbjct 110683 TTTTGACAGCAGTGTCAATCAAACCTTCGCGACCAGCCATAGCGTGGAAGAAGAATTCGG 110742 Query 378311 TAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCAT 378370 | || || ||||||| | | | || |||| | ||||| | | |||| |||| || Sbjct 110743 TGGGTGTCAGTCCACGGAGATACGAGTTCTCGACGAATCCACGAGATTCTGGAGAATAAT 110802 Query 378371 CATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCAT 378430 ||| |||||| |||| || ||||| |||| | ||| || | ||||| || ||||| | Sbjct 110803 CATCTTTTGTGAAATGTGGCAATGTCCGATATTTAAATCCGAAAGGAATACGCTTTCCTT 110862 Query 378431 CAACATTCTGTTGACC 378446 |||| ||||||||| Sbjct 110863 CAACTGACTGTTGACC 110878 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || |||||||| | ||||| ||| || || | ||||||||||| Sbjct 109863 ATTTCCTTAAGACGAGGCACACCTAGCGTAACGTTC---TTTGAGGACACACCAGCAAAA 109919 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 || ||||| || ||||| | || |||| ||||| ||||||||||| || || | || Sbjct 109920 TGAAAAGTGTTGAGAGTCATCTGGGTAGCCGGCTCTCCAATTGACTGGGCAGCCAACACA 109979 Query 377566 CCAACCATTTCTCCAGGATT 377585 |||||||| || || ||||| Sbjct 109980 CCAACCATCTCACCGGGATT 109999 >seq13 Length=341173 Score = 120 bits (132), Expect = 9e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || || |||||||| || | || || || || ||||| |||||||||||||| Sbjct 272679 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 272738 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| ||||| ||||| || || ||||| ||||| || ||||| || || | || || || Sbjct 272739 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 272798 Query 140666 ATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 || |||| || | ||| ||| ||||| || || | || || || || ||||| || | Sbjct 272799 GTCTATCGTGTC-GCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGA 272857 Query 140725 CAAAAATCTGCAT 140737 | || |||||||| Sbjct 272858 CGAAGATCTGCAT 272870 Score = 114 bits (126), Expect = 4e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || ||||| || || ||||| || || || || Sbjct 272868 CATGCCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTC 272927 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || |||||||| |||||||| ||||||||||| || || Sbjct 272928 CGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGG 272987 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || ||||| || || | || || || || || | || | ||| || Sbjct 272988 AGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATT 273046 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | || ||||| || | ||||| ||||| || ||||| || Sbjct 273047 CGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 273086 >seq5 Length=454596 Score = 104 bits (114), Expect = 7e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| || ||||| ||||||||||| Sbjct 18797 ACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGA 18738 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || ||||| |||||||| || ||||| ||||| ||||| || || || Sbjct 18737 AAGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGG 18678 Query 140630 AATTCCTTCTTTATC 140644 |||||| || || || Sbjct 18677 AATTCCCTCCTTGTC 18663 >seq104 Length=64360 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 378213 TTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAA 378272 ||| ||||||| |||||| |||||||| |||| ||| || || || |||||||| || Sbjct 36699 TTTCATAAGTCTTCGAGACATATAACCTGTTTCTGCAGTCTTCACGGCGGTATCAATCAA 36640 Query 378273 ACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCA 378324 ||| |||| ||| ||| || ||||| | ||||| ||||||||||||||| Sbjct 36639 ACCCTCACGGCCAGACATAGCGTGGAAAAGAAATTCGGTAGGAGTAAGTCCA 36588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247022605140