Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq96 181 1e-40 seq109 96.9 4e-15 >seq96 Length=72333 Score = 181 bits (200), Expect = 1e-40 Identities = 400/600 (67%), Gaps = 0/600 (0%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 |||||||| || ||||| ||||| || || ||| | | ||| || |||||| | Sbjct 48111 ATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTAATTGAAACATACAAT 48170 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| |||||| | |||||| || || | || || || ||||| ||||| || Sbjct 48171 CTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTTCAATGCCGGAACCCCG 48230 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | ||||| ||| | ||| ||||| | | |||||||| ||||| || || || ||| Sbjct 48231 CAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATC 48290 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || || ||| || || || || ||| | || || ||||| | || Sbjct 48291 TACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAAC 48350 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 | |||||| | | || | || ||| || ||||| || |||| Sbjct 48351 GTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGA 48410 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 |||||||| ||||| || || ||||||||||| ||||| || ||| ||||||| ||| | Sbjct 48411 ATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGTCGACCAGGGTGGCAAC 48470 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 || || || | || || |||||||| |||||||||||||| || || | || ||| Sbjct 48471 AAGCGTCCAGGTGCCTTTGCTATCTACCTGGAGCCATGGCACGCTGATATCTTTGAGTTC 48530 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 || || || ||| |||||| || | || || | || || || || ||| |||| Sbjct 48531 CTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGATCTATTCTTGGCC 48590 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 ||||||| ||| || | |||||| || ||||| ||| | | || ||| ||| | Sbjct 48591 TTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTC 48650 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 ||||| | || ||||| | | || |||||||| || | |||| | | |||||| Sbjct 48651 TGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGAAGAGTTCGAGGCATTGTAC 48710 Score = 179 bits (198), Expect = 4e-40 Identities = 402/602 (67%), Gaps = 4/602 (1%) Strand=Plus/Minus Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 |||||| | | ||| | || || |||||||| | || || || ||| | ||||| Sbjct 48710 GTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCA 48651 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 | ||| ||| || | | ||| ||||| || |||||| | || || |||||| Sbjct 48650 GAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAA 48591 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 |||| ||| || || ||| ||| | || || | || |||||| || || || || Sbjct 48590 GGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAG 48531 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 || || | ||| || |||||||| |||||||| ||||| || || | ||| ||||| Sbjct 48530 GAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTT 48471 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | ||| ||||||| ||| || | ||| ||||||||||| || || |||||||| ||||| Sbjct 48470 GTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGAT 48411 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAG 79644 |||| || | |||||| || || || | ||| | || || || | | || Sbjct 48410 TCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGA- 48352 Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 || | ||||| || || | ||| || || || || ||| || || ||| Sbjct 48351 -CGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCG 48293 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 ||||| || ||||| ||| |||||||| | | ||||||||| | ||| || || Sbjct 48292 TAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGC 48233 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 | || ||||| |||||||| || || | || || |||||| | || ||| ||| Sbjct 48232 TGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 48173 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 |||| ||| || || | || | | ||| || |||||||| ||||| || || ||| Sbjct 48172 AGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGC 48113 Query 79885 AT 79886 || Sbjct 48112 AT 48111 >seq109 Length=59048 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 |||| ||||| || || | || ||||| ||| || || || |||||| ||||| | Sbjct 41529 CATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCT 41588 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || | || |||||||| || |||||||| |||||||| || || | |||||||||| Sbjct 41589 TCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACG 41648 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | || || ||||| ||||| ||||| || Sbjct 41649 AACTCATCTCCCGTGACGAAGGCCTACA 41676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522194507200