Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31]
380 sequences; 22,521,034 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq96 181 1e-40
seq109 96.9 4e-15
>seq96
Length=72333
Score = 181 bits (200), Expect = 1e-40
Identities = 400/600 (67%), Gaps = 0/600 (0%)
Strand=Plus/Plus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
|||||||| || ||||| ||||| || || ||| | | ||| || |||||| |
Sbjct 48111 ATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTAATTGAAACATACAAT 48170
Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237
|| ||| |||||| | |||||| || || | || || || ||||| ||||| ||
Sbjct 48171 CTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTTCAATGCCGGAACCCCG 48230
Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297
| ||||| ||| | ||| ||||| | | |||||||| ||||| || || || |||
Sbjct 48231 CAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATC 48290
Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357
||||| || || ||| || || || || ||| | || || ||||| | ||
Sbjct 48291 TACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAAC 48350
Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417
| |||||| | | || | || ||| || ||||| || ||||
Sbjct 48351 GTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGA 48410
Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477
|||||||| ||||| || || ||||||||||| ||||| || ||| ||||||| ||| |
Sbjct 48411 ATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGTCGACCAGGGTGGCAAC 48470
Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537
|| || || | || || |||||||| |||||||||||||| || || | || |||
Sbjct 48471 AAGCGTCCAGGTGCCTTTGCTATCTACCTGGAGCCATGGCACGCTGATATCTTTGAGTTC 48530
Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597
|| || || ||| |||||| || | || || | || || || || ||| ||||
Sbjct 48531 CTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGATCTATTCTTGGCC 48590
Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657
||||||| ||| || | |||||| || ||||| ||| | | || ||| ||| |
Sbjct 48591 TTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTC 48650
Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717
||||| | || ||||| | | || |||||||| || | |||| | | ||||||
Sbjct 48651 TGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGAAGAGTTCGAGGCATTGTAC 48710
Score = 179 bits (198), Expect = 4e-40
Identities = 402/602 (67%), Gaps = 4/602 (1%)
Strand=Plus/Minus
Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346
|||||| | | ||| | || || |||||||| | || || || ||| | |||||
Sbjct 48710 GTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCA 48651
Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406
| ||| ||| || | | ||| ||||| || |||||| | || || ||||||
Sbjct 48650 GAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAA 48591
Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466
|||| ||| || || ||| ||| | || || | || |||||| || || || ||
Sbjct 48590 GGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAG 48531
Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526
|| || | ||| || |||||||| |||||||| ||||| || || | ||| |||||
Sbjct 48530 GAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTT 48471
Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586
| ||| ||||||| ||| || | ||| ||||||||||| || || |||||||| |||||
Sbjct 48470 GTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGAT 48411
Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAG 79644
|||| || | |||||| || || || | ||| | || || || | | ||
Sbjct 48410 TCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGA- 48352
Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704
|| | ||||| || || | ||| || || || || ||| || || |||
Sbjct 48351 -CGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCG 48293
Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764
||||| || ||||| ||| |||||||| | | ||||||||| | ||| || ||
Sbjct 48292 TAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGC 48233
Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824
| || ||||| |||||||| || || | || || |||||| | || ||| |||
Sbjct 48232 TGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 48173
Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884
|||| ||| || || | || | | ||| || |||||||| ||||| || || |||
Sbjct 48172 AGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGC 48113
Query 79885 AT 79886
||
Sbjct 48112 AT 48111
>seq109
Length=59048
Score = 96.9 bits (106), Expect = 4e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030
|||| ||||| || || | || ||||| ||| || || || |||||| ||||| |
Sbjct 41529 CATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCT 41588
Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090
|| | || |||||||| || |||||||| |||||||| || || | ||||||||||
Sbjct 41589 TCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACG 41648
Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118
| || || ||||| ||||| ||||| ||
Sbjct 41649 AACTCATCTCCCGTGACGAAGGCCTACA 41676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548522194507200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |