Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq96 161 1e-34 seq109 93.3 5e-14 seq64 93.3 5e-14 >seq96 Length=72333 Score = 161 bits (178), Expect = 1e-34 Identities = 402/606 (66%), Gaps = 6/606 (1%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||| ||| || | | ||||| || ||| | |||||||||||||| ||| | || Sbjct 48095 GCCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGT 48154 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||| || ||| | | ||| ||| || ||||| || || ||| | || || || || Sbjct 48155 AATTGAAACATACAATCTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTT 48214 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || || || || || || ||| | ||||||||| | | |||||||| || Sbjct 48215 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 48274 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 | ||||| || |||||||| || || ||| ||||| || || ||| | || Sbjct 48275 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 48334 Query 53419 TGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACG 53476 || |||||| | || || | ||| |||||| | ||| | || || || Sbjct 48335 AGGAATCGGTCTTAACG--TCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACC 48392 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 |||||| | || | |||||||| || ||||| || || ||||||||||| ||| | || Sbjct 48393 AACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATAT 48452 Query 53537 GTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| | ||| | | || || |||||||| ||||| ||||| Sbjct 48453 GTCGACCAGGGTGGCAACAAGCGTCCAGGTG-CCTTTGCTATCTACCTGGAGCCATGGCA 48511 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||| || || | ||||| || || || || ||| || || | ||||| | || Sbjct 48512 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 48571 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 |||||| || || || |||||| ||| || | |||||| | || || ||| | Sbjct 48572 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 48631 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775 | || ||| ||| | ||||| || ||| || || | | ||||||||| || Sbjct 48632 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 48691 Query 53776 GGAGTT 53781 ||||| Sbjct 48692 AGAGTT 48697 >seq109 Length=59048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| || | | || | ||| || || || | || || ||||| || |||||||| Sbjct 41671 GCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 41612 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||| ||| ||||||| |||||| || |||||||| || || ||||| ||||| Sbjct 41611 CTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAA 41552 Query 74888 GGCGACAAGGCGTTGCGCGAA 74908 ||| |||||||| || ||||| Sbjct 41551 GGCAACAAGGCGCTGTGCGAA 41531 >seq64 Length=116485 Score = 93.3 bits (102), Expect = 5e-14 Identities = 227/339 (67%), Gaps = 20/339 (6%) Strand=Plus/Plus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075 ||||||||||| ||||| ||||| ||| ||||| ||||||| |||||||||| Sbjct 61699 CCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAATGGCCGTACCGG 61758 Query 118076 AAATCTC-----TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130 | ||| |||| |||| |||| ||| || | || | || ||||| | Sbjct 61759 AGGCCTCGAGTATCAG-----TATATTCCTTTTTATGCTGTAAGCCAATGAAATTTTTGA 61813 Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190 ||| | ||| |||| | || | || | || || ||| || ||||||||| | Sbjct 61814 TGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAACGTTGAGAA 61873 Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC-GCTCAAGCCGGCA 118249 | || || || |||||||| || ||||| |||| | |||||||| |||| |||||| Sbjct 61874 GTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC-GGCCGGCC 61932 Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTG-CG 118308 ||||| | |||| || || ||||| || || | || ||||| || ||| || | Sbjct 61933 ATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACA----GTGATGTCC 61988 Query 118309 A---TGAGTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344 | | ||| |||||| ||| ||||| |||||||| Sbjct 61989 ATCTTTAGTGCCGGCCTTATTTGCATCTGTAAGCTTCGG 62027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/298 (68%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 152770 TTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGA 152829 |||| || ||||||||||| || |||||| ||||| || ||||| ||||||| | Sbjct 61687 TTGATGAGTAAGCCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAA 61746 Query 152830 CGACCGTAGCGCAGGTCACGTAGTGACCCGTAGA--CCTTTCCATGTTGAAGCCCGAGGA 152887 | ||||| || ||| | || ||| | | ||| | ||||| ||| || | || | || Sbjct 61747 TGGCCGTACCGGAGGCCTCG-AGT-ATCAGTATATTCCTTTTTATGCTGTAAGCCAATGA 61804 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 ||||||| ||| | ||| |||| | | | || | || | |||||| |||| Sbjct 61805 AATTTTTGATGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAA 61864 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC-GCTC 153006 | ||| | | ||||| || |||||||| || || || || | || ||||| |||| Sbjct 61865 CGTTGAGAAGTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC 61924 Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGT 153064 | ||||| ||||| | | || || || ||||| || || | || || ||||||| Sbjct 61925 -GGCCGGCCATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACAGT 61981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213400724000