Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq5 107 2e-18 >seq13 Length=341173 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || || || || ||||||||||| || ||||||||||| || || | || | ||| | Sbjct 273086 GTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGAC 273027 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || |||||||||||||| ||||| || Sbjct 273026 AACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTCATC 272967 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || || || |||||||| | || ||||| | ||||| || ||||||||||| Sbjct 272966 TTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGGAA 272907 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| | ||||| || || || Sbjct 272906 TCAACTCTCCACCTTGTCCTTCGTCTGCGTGGAGG 272872 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||||||||| || || ||||| ||||| | || | |||| || | ||| | Sbjct 273372 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACC 273313 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || |||||||||||||| || || ||||| || || Sbjct 273312 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGAAAA 273253 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| ||| || || Sbjct 273252 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCAC 273193 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 273192 CTCGTCCTTCGTCTCCGTGGTGG 273170 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| ||||| ||||| || || || || | Sbjct 272870 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 272811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || ||||| ||||||||| Sbjct 272810 GACACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAG 272751 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| || || || ||||| | || || || | || ||||| Sbjct 272750 CAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAAC 272691 Query 27586 GTCCAAAAGGA 27596 |||| ||||| Sbjct 272690 ATCCAGAAGGA 272680 >seq5 Length=454596 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||||||||| ||||||||||||||||| || || || || || || || ||| Sbjct 18663 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 18722 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||||| || | || ||||| | || ||||| ||||| ||||| || || | Sbjct 18723 GACGGCCGTACTCTTTCTGATTATAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCTC 18782 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || ||||| Sbjct 18783 CGTCTCCGTGGTGG 18796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307691025600