Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 131 1e-25 seq5 102 5e-17 >seq13 Length=341173 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| | |||| ||||||||| | ||||||||||| || ||||||||||| || Sbjct 272644 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 272703 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| ||||| || ||||| || | |||||| ||||| ||||| Sbjct 272704 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 272763 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| ||||| || ||| | || ||||| | || || Sbjct 272764 ATACCTTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTAC 272822 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || ||||| || || | || || || || ||||||||| Sbjct 272823 TTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 272871 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || || |||| || || ||| Sbjct 273194 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGT 273253 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| ||||| || || | ||||||||||| |||| || Sbjct 273254 TTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATC-TT 273312 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | |||||| || | ||| || || || ||||| Sbjct 273313 GGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 >seq5 Length=454596 Score = 102 bits (112), Expect = 5e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || ||| |||||| |||||||||||||| ||||| || || Sbjct 18787 AGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGG 18728 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| ||||| || || || || | |||||| ||||| || || | ||||||| Sbjct 18727 CCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCC 18668 Query 34609 TTGTCT 34614 |||||| Sbjct 18667 TTGTCT 18662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728142408540