Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31]
380 sequences; 22,521,034 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq13 131 1e-25
seq5 102 5e-17
>seq13
Length=341173
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||||| | |||| ||||||||| | ||||||||||| || ||||||||||| ||
Sbjct 272644 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 272703
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| ||||| ||||| || ||||| || | |||||| ||||| |||||
Sbjct 272704 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 272763
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||| ||||| || ||| | || ||||| | || ||
Sbjct 272764 ATACCTTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTAC 272822
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || ||||| || || | || || || || |||||||||
Sbjct 272823 TTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 272871
Score = 93.3 bits (102), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||||||||||| || ||||| || || || || || || |||| || || |||
Sbjct 273194 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGT 273253
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || ||||| || | ||||| ||||| || || | ||||||||||| |||| ||
Sbjct 273254 TTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATC-TT 273312
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || ||| | ||| ||||| | |||||| || | ||| || || || |||||
Sbjct 273313 GGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372
>seq5
Length=454596
Score = 102 bits (112), Expect = 5e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | || || ||| |||||| |||||||||||||| ||||| || ||
Sbjct 18787 AGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGG 18728
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| ||||| || || || || | |||||| ||||| || || | |||||||
Sbjct 18727 CCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCC 18668
Query 34609 TTGTCT 34614
||||||
Sbjct 18667 TTGTCT 18662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728142408540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |