Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13 134 3e-26 seq277 93.3 1e-13 seq96 84.2 5e-11 >seq13 Length=341173 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| ||||| ||||||| ||||| || | | || | || || Sbjct 272887 AGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCC 272946 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || ||||| ||||| || || || || |||||||| Sbjct 272947 TCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 273006 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||| || || | ||||| ||| Sbjct 273007 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTC 273066 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||| |||||| Sbjct 273067 TTGCCGGTCAGAGTTTT 273083 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || || |||| || ||||||| || || | || || || ||||| || ||||| ||| Sbjct 272680 TCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAG 272739 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || || || ||||| |||||||||||||||||||| ||||||||| ||| || Sbjct 272740 ATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTG 272799 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || ||||| || ||| || || | ||||| || |||||||||| || || | | Sbjct 272800 TCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACG 272859 Query 225703 AACACTTGCAT 225713 || | ||||| Sbjct 272860 AAGATCTGCAT 272870 >seq277 Length=1315 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| |||||||||||||||||||| || | |||||||| || || || | Sbjct 892 TTCTGGATGACCGAAAAATCAGAATAAATGTTGGTATAAAATAGGATCACCACCACCAGC 951 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | ||||| |||| | ||||||||||||||||| ||||| |||| Sbjct 952 TAATTCAAAGAAAGAT-GTATTAAAATTTCTATCTGTTAATAACA 995 >seq96 Length=72333 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 193633 ACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCT 193692 |||||||||||| | |||| || |||| |||||||| || | | || ||||| || | Sbjct 48717 ACTTTTCGTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCAT 48658 Query 193693 TTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATG 193752 | ||||| || || ||||||| |||| |||| || | ||||||||| | |||| | Sbjct 48657 TAGGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAG 48598 Query 193753 TCCAAATGGCGTAGAAAAG 193771 |||| | ||| |||| || Sbjct 48597 TCCACAAGGCCAAGAATAG 48579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525393863720