Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq96 264 2e-65 >seq96 Length=72333 Score = 264 bits (292), Expect = 2e-65 Identities = 601/896 (67%), Gaps = 6/896 (1%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || || ||||| | |||||| |||||||||| ||||| ||||| | | | | Sbjct 48700 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 48641 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || |||| | | |||||| ||||| || | |||||| |||| | || | ||| Sbjct 48640 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAAT 48581 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| |||| | |||||| ||||| ||||| || || || ||||| | Sbjct 48580 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 48521 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||||| |||||||| || || || || || | | || || || || || || ||| Sbjct 48520 ATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCC 48461 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | ||||||||| ||||| || | || | | ||| || | || ||||| || Sbjct 48460 TGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAG 48401 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 | || || ||||||| ||| || ||| | || || ||| | | | || Sbjct 48400 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCG 48341 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 |||||||| || |||| || || | ||| || |||| ||| ||||||||||| || Sbjct 48340 ATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 48281 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 |||||||| ||| |||||| || || || ||| || |||||| | || ||||| Sbjct 48280 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 48221 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||||| || | || ||||| ||||| || || |||| | || | |||||||||||| Sbjct 48220 GCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 48161 Query 78465 TCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||||| || || | |||| || | || || || || || || ||||| | |||||| Sbjct 48160 TCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATATG 48102 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| || | |||| | ||| || || | || |||||| |||| | || || Sbjct 48101 CTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTT 48042 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATC 78643 || || ||||| | ||| |||||| | ||||| | |||| | || || |||| || Sbjct 48041 GAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCTTC 47982 Query 78644 TTTGTATTTGGTAACAATATCCATGACAGTAGT-TGAAATAATAGGAGATCGTACACCAT 78702 | ||| | || || ||| || | | || || || |||| | | || | Sbjct 47981 AGCATGTTTCATGACGATCTCC-CGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCGT 47923 Query 78703 TTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTA-AATAGtttttttGTT 78761 | ||||| ||||| |||| | | | || || || || || | ||| | || || ||| Sbjct 47922 TCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGTT 47864 Query 78762 TCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 | ||||| || || || || |||||||||||||| ||||| ||||| || ||||| Sbjct 47863 TGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 47808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 183/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 76781 TGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAG 76840 ||| || || ||||||| ||| || | | ||||| ||||||||||| || || || || Sbjct 49914 TGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATGCCGGTCTTGAG 49855 Query 76841 ACCCAGACTCCATCCGTAGAAATGCATGCTTGTCA-GTTTGGAATAACTAGGATCGGCTA 76899 ||| || |||| || ||| ||||| || || | ||| || |||| || | Sbjct 49854 ACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGTAGGCTCTTTCA 49796 Query 76900 TATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTA 76959 || || || | || ||| || || ||||| || |||| |||||| ||||| | | Sbjct 49795 AGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGCGGCCATCTGAA 49736 Query 76960 TAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 ||| || ||||| ||||||||| | || ||| | | ||||| || |||| | Sbjct 49735 CAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGATGTCTGCTGGGA 49676 Query 77020 GGTTTG---TATTTTGAATGGAACCACCATC 77047 ||| | | ||||| ||||||||||| || Sbjct 49675 TGTTAGAGATGTTTTGGATGGAACCACCGTC 49645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665500323200