Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq96 293 3e-74 >seq96 Length=72333 Score = 293 bits (324), Expect = 3e-74 Identities = 605/895 (68%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || || || ||||| | |||||| |||| |||||| ||||| || || | | | | Sbjct 48700 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 48641 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || |||| | | ||| || ||||| || | |||||| |||| | || | ||| Sbjct 48640 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAAT 48581 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| |||| | |||||| ||||| ||||| || || |||||||| | Sbjct 48580 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 48521 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||||| |||||||| || || || || || | |||| || || || || || ||| Sbjct 48520 ATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCC 48461 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||||||||||||||| || | || | | ||| || | || ||||| || Sbjct 48460 TGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAG 48401 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | || || ||||||| ||| || ||| ||||| ||| | || || Sbjct 48400 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCG 48341 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 |||||||| || | || || || | ||||||| |||| |||||| ||||| || || Sbjct 48340 ATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 48281 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||||| || ||| |||||| || || || ||| || |||||| | || ||||| Sbjct 48280 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 48221 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| || | || ||||| ||||| ||||| |||| | || | |||||||||||| Sbjct 48220 GCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 48161 Query 77060 TCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||||| ||| || | ||| || | || || || || || || ||||| | |||||| Sbjct 48160 TCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATATG 48102 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||| || ||||| || ||| || || | || |||||| |||| | || || Sbjct 48101 CTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTT 48042 Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 || || ||||| | ||| |||||| | ||||| | |||| |||| || |||| || Sbjct 48041 GAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCTTC 47982 Query 77239 CTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCCAT 77297 || ||| | || || ||| || | | || || || |||| | | || | Sbjct 47981 AGCATGTTTCATGACGATCTCC-CGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCGT 47923 Query 77298 TTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTT 77357 | ||||| ||||| |||| | | | ||| || || ||| ||| | || || |||| Sbjct 47922 TCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAACGGACGAGAATTGCTTCTTGGTTT 47863 Query 77358 CCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 ||||| || ||||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct 47862 GTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 47808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/275 (67%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 76181 TCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 76240 || || ||| | || | ||||||||||| || | | || || | |||||| |||| Sbjct 49106 TCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCCAAAA 49047 Query 76241 TCAAATTTTC------CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAA 76294 || ||| | || | |||||| || ||| || ||||| || | |||||| Sbjct 49046 TCGTATTCACCGCGAACAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAAGTTACAA 48987 Query 76295 ACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATT---ACTACAC 76351 || || ||||||| | || |||| | || || ||||| || || ||||| Sbjct 48986 ACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGAACTAC-- 48929 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411 |||||| ||||| || | ||| ||||||||| ||| || || ||||| ||||| | | Sbjct 48928 -GGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAGCATA 48870 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || ||||||| || |||| | |||| ||| Sbjct 48869 AAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAAT 48835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931013561600