Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13 111 4e-19 >seq13 Length=341173 Score = 111 bits (122), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || |||||||| ||||||| | || | || || || || ||| || || || Sbjct 272679 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 272738 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||| | || || |||||||| || || || ||| ||||| | Sbjct 272739 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 272798 Query 152033 CTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 |||| |||| || | ||| ||||| ||||| |||||||||||||| || ||||| Sbjct 272799 GTCTATCGTGTCGCTGGATTCT--ACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTG 272856 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 272857 ACGAAGATCTGCAT 272870 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| || || |||||||||||||| || | | || | || || Sbjct 272887 AGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCC 272946 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | |||||||| | | ||| || ||||| || Sbjct 272947 TCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 273006 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || ||||| | || | | ||| ||| | || || |||||||| || | Sbjct 273007 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGA--TTCGACCTCAAGAGTGATGG 273064 Query 152071 TTTTGCCCGTGAGAGTCTTCACGA 152094 | ||||| || ||||| ||||||| Sbjct 273065 TCTTGCCGGTCAGAGTTTTCACGA 273088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815182334980