Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13 158 3e-33 seq109 105 1e-17 seq5 93.3 9e-14 >seq13 Length=341173 Score = 158 bits (174), Expect = 3e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| ||||| || || || | || ||| ||||||||||||||||| | Sbjct 272872 CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAG 272931 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || ||||| || |||||||| | |||||| ||||| || Sbjct 272932 AGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGG 272991 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| ||||| | |||||| Sbjct 272992 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACC 273051 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 || |||||||| ||||| || |||| ||| || |||| || Sbjct 273052 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGACTA 273091 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||||| || || |||||||||||||| | Sbjct 273170 CCACCACGGAGACGAAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 273229 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || ||||| || |||||||||| || || ||||| || Sbjct 273230 AGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 273289 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | || |||||||| | || || Sbjct 273290 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACC 273349 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 273350 TCGAGGGTGATAGTCTTGCCGGT 273372 >seq109 Length=59048 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| |||| ||| | | || |||||||| | ||| || | || || Sbjct 41744 ATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCC 41803 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||||||||||||| | |||||| | || || || || ||||| || ||| | || Sbjct 41804 CTTCTCGGCATGAATGCTAAGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTT 41863 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || || |||| | || ||| ||| |||||||||| || ||||| Sbjct 41864 CTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGAC 41923 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA 230398 || || ||| || || || ||||||||||| |||||||| | ||||| || Sbjct 41924 AATATCTCCCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCA 41979 >seq5 Length=454596 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| || || || ||||| || |||| Sbjct 18797 ACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGA 18738 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || ||||| || || ||||||| ||| || ||||| || Sbjct 18737 AAGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGG 18678 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 18677 AATTCCCTCCTTGTCT 18662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734103688520