Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 170 5e-37 seq5 87.8 4e-12 >seq13 Length=341173 Score = 170 bits (188), Expect = 5e-37 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 ||||||||||||| || || || || ||||| || ||||| ||| | |||||||||| Sbjct 273088 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 273029 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || |||||||| ||||||||||| || | Sbjct 273028 ACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTCA 272969 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || |||||||||||||| || || |||| || | || || ||| ||||||| | Sbjct 272968 TCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGG 272909 Query 178111 AATCAACACTGCATCTTGT 178129 ||||||| || || ||||| Sbjct 272908 AATCAACTCTCCACCTTGT 272890 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| || || || ||| | ||| Sbjct 272867 CAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGCGAC 272808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||| |||||||| ||||| || || || |||||||| Sbjct 272807 ACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAGCAG 272748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||||||||| || || || |||| || ||||||||||| || Sbjct 272747 CGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAACATC 272688 Query 178104 CAAAAAGA 178111 || || || Sbjct 272687 CAGAAGGA 272680 Score = 120 bits (132), Expect = 7e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| | ||||| || || |||||||| Sbjct 273374 TCACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGA 273315 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| || |||||||| || || ||||| || |||| Sbjct 273314 CCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGAA 273255 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||||| || || | || || |||| || ||| |||| || || Sbjct 273254 AACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 273206 >seq5 Length=454596 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || ||||| || || |||||||| || || |||||||| ||||||||||| || Sbjct 18663 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 18722 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | |||||| | ||||||||| | || || || || || || || || || Sbjct 18723 GACGGCCGTACTCTTTCTGATTATAACATTCAGAAGGAGTCCACCCTTCACCTCGT 18778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725339333720