Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 201 1e-46 seq19 102 1e-16 >seq14 Length=2198313 Score = 201 bits (222), Expect = 1e-46 Identities = 590/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Plus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 |||||| || ||||| ||||| | |||| ||||||||||| |||| || || Sbjct 1894933 TACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAG 1894992 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | | ||| || || | | | ||||| ||||| || | ||||||| |||| | Sbjct 1894993 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAG 1895052 Query 54062 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 || | |||||||| | || | ||| || ||||| ||||| || || ||| Sbjct 1895053 GCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 1895112 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 ||| | | ||||||| ||||| || |||| ||| || | | | || || || ||| Sbjct 1895113 AACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTG 1895172 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 || || ||||| || | ||||| || ||||| || | || | | ||| || | || Sbjct 1895173 TTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATT 1895232 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 54301 || ||||| | || ||||| || | || ||| ||| ||||||| ||| | Sbjct 1895233 CCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACG 1895292 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 ||||| || || || || | || || || || || || || | || || ||| Sbjct 1895293 TTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAG 1895352 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 || || || ||||| || ||| |||||| || || || ||| || |||||| | | Sbjct 1895353 ATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGC 1895412 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||||| ||||| || | || ||||| || || || || |||| | || | ||| Sbjct 1895413 GGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGA 1895472 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 54540 ||||| || || || || || | ||| || | || || || || || || ||||| Sbjct 1895473 TTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCAT 1895531 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 || ||| ||||| || | |||| | | |||| ||| || |||| ||| || |||| Sbjct 1895532 TATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTC 1895591 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 | || || || || ||||| | ||| |||||| || ||||| | |||| | ||||| Sbjct 1895592 AAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 1895651 Query 54661 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATG 54720 ||||| || || ||| | || | ||| || | || || || |||| | Sbjct 1895652 GAGTTCTTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGG 1895711 Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTA-AATAGtt 54779 || || ||||| || || |||| | | | || | || || || | ||| | | Sbjct 1895712 CCGGCCGTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCT 1895770 Query 54780 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 54839 | || |||| |||||| || || || || |||||||| || || ||||||||||| || | Sbjct 1895771 TCTTGGTTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTG 1895830 Query 54840 GATG 54843 |||| Sbjct 1895831 GATG 1895834 >seq19 Length=1505300 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| |||||| || ||||| | || | ||||||||| || |||||| Sbjct 41955 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41896 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || ||||| || || || || |||||| Sbjct 41895 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41836 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAG 24283 || || || || || |||||||||| ||| Sbjct 41835 ATACCCTCGACGGCAGCAAAGGCAACAAG 41807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721458991120