Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19 154 2e-32 seq16 134 1e-26 >seq19 Length=1505300 Score = 154 bits (170), Expect = 2e-32 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | || |||||| | | | || | |||| |||||| Sbjct 41748 AGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCACAGCGCC 41807 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || ||||||||||| | ||||| ||| |||||| |||| || | Sbjct 41808 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 41867 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || ||||||||||| || || ||| |||||| ||||||||| | | Sbjct 41868 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 41927 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220 |||| || || || || |||||||| | |||||| || | | || || | Sbjct 41928 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 41987 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | || || || ||| |||| || || ||| ||||||||||| ||| | Sbjct 41988 ACCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTG 42046 Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || || || |||| || || || | || ||| || | |||| || |||| Sbjct 42047 ACCGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGCCAGTACA 42104 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 | |||||||||||||| ||||| || | | || | | ||| ||||||||| Sbjct 42105 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCA 42164 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||||||| | ||||| ||| || |||||| Sbjct 42165 CCAACCCCTTCGACTTCATGGACAATATCTCC 42196 Score = 136 bits (150), Expect = 4e-27 Identities = 201/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || || || |||||||| | ||| ||| | ||||| Sbjct 41342 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41401 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| | ||||||| | | | || ||| | || || |||||| Sbjct 41402 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41461 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| ||||||| ||||||||| || |||||||| |||||||| || | || ||| Sbjct 41462 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACGT 41521 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||||| | || || || |||||||| ||||| |||||| ||| Sbjct 41522 TTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGATG 41581 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||| | ||||| |||| || || |||||||||||| || Sbjct 41582 GAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTA 41625 >seq16 Length=1024933 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||||||||| ||||| | || || ||| ||| | Sbjct 591445 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 591386 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| || || || || | ||||| Sbjct 591385 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCA 591327 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || |||||||| || |||| || || || ||| || || Sbjct 591326 GCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAA 591267 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | ||| |||| ||| | ||||| Sbjct 591266 CATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 591219 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| | Sbjct 591666 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 591607 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||||||||| | ||||||||||| Sbjct 591606 TCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGT 591548 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 591547 CTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAA 591488 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || || || || Sbjct 591487 AAGGAATCAACTCTCCACCTTGT 591465 Score = 129 bits (142), Expect = 6e-25 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| || |||||| |||| || || ||| ||||| | | |||| ||||| Sbjct 591949 TCACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG-TCAAG 591891 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| | |||||||| || || |||| || || Sbjct 591890 ACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGA 591831 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 |||||||| || |||| ||||||||| |||||||||||||||||||||| ||| || Sbjct 591830 AAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTC 591771 Query 40891 CATCTAGT 40898 || || || Sbjct 591770 CACCTCGT 591763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440