Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14 215 5e-51 seq19 143 2e-29 seq16 113 4e-20 >seq14 Length=2198313 Score = 215 bits (238), Expect = 5e-51 Identities = 434/641 (68%), Gaps = 6/641 (1%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||| || |||| || | ||| || |||| | || |||| || || ||||| Sbjct 1895014 TTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCA 1895073 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || || || |||||| | || | || || || | || || ||| Sbjct 1895074 CGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGC 1895133 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || || | ||| ||||| ||||| ||||| || Sbjct 1895134 CATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAT 1895193 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||||||| |||| | ||||| || |||| |||||||| | |||| Sbjct 1895194 CTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTT 1895253 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | || || | || || | ||| |||| | ||| || ||||| | Sbjct 1895254 CCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCGATTCCTCCAGCA 1895313 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | || || |||| || || ||||| ||||||||||| || ||||| |||||||| Sbjct 1895314 GTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCC 1895373 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | | | | ||| || |||| |||||||| | || || |||| ||| || Sbjct 1895374 TTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGA 1895433 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || ||| || || |||||| | ||||| |||||||| || || || | Sbjct 1895434 GTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTC 1895493 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TC- 23875 |||| |||||| ||||| ||||||| ||| || ||||| ||||| | || || | || Sbjct 1895494 TCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTTCA 1895553 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 | ||| | |||||| || | ||| ||||| | || | ||| || || || ||| Sbjct 1895554 GCAACCTT---GCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAA 1895610 Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || | |||||||||||||| |||| ||| || ||||| || Sbjct 1895611 TACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 1895651 Score = 154 bits (170), Expect = 1e-32 Identities = 434/655 (66%), Gaps = 15/655 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| | |||||| | || || || Sbjct 1893757 TGGTACGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATAC 1893816 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || | ||||| | ||| | || || | |||| || ||| ||| || | Sbjct 1893817 TGGTGATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAA 1893876 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACG 22321 | || || |||||||| |||||||| | | |||| ||||| || |||||||| ||| Sbjct 1893877 TGAAGGCGCCTCGATCAGCGGCCATCTGAA-CAATAGTACGTTGAGAAATTTCCCACACG 1893935 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 ||||||||||| | |||| ||| || || ||| | |||| ||| || Sbjct 1893936 GTCTTGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCG 1893995 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| ||||| || | ||| ||||| |||| | || || |||||| Sbjct 1893996 TCGGCGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTG 1894055 Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATG 22498 | || ||| |||| || ||||| |||||||| | |||| || |||||| ||| ||| Sbjct 1894056 AGAAGCCATG--GGTTGACAACTTGGAACTCGCCAG-CAAGTACACGGCGTGAGTAGATG 1894112 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 ||||| ||| | ||||| || | || ||| || || |||||| ||| || || Sbjct 1894113 TTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTT 1894172 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCT-TGA 22616 ||||| ||||| | |||| ||| | | |||||||| || || | | || | || Sbjct 1894173 GGCATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 1894232 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACA 22676 |||| ||||||||| || |||| |||||| || || ||||||||||||||| | | Sbjct 1894233 CCATC--CCAGTCCCAGAGGTCGGTCGGCGTTAC---GTTCCACATATCGTATTGAAGGA 1894287 Query 22677 CGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736 || || | || || ||||| | ||| ||||||| | | |||||||| Sbjct 1894288 TACCCTGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTT 1894347 Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 | || || |||||| | | || | ||||||||||||| ||||||| Sbjct 1894348 CACACGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAA 1894402 >seq19 Length=1505300 Score = 143 bits (158), Expect = 2e-29 Identities = 335/500 (67%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| ||||| || | || | || || || |||||||| ||||| ||||| ||| Sbjct 41790 CCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCT 41849 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| || | || || ||| ||||||| || || || |||||||| || || || || Sbjct 41850 CCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCA 41909 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 |||| | || || || ||||| || || || ||||||||||| ||||| ||| ||||| Sbjct 41910 ACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTC 41969 Query 58138 ACATTGTCAATAAACC-GACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCG 58194 || | | || || ||| | | | | || || ||| ||||| || || ||| Sbjct 41970 ACCTCAACTATCGTCCTGACCCCAGTGC---TGTTGAGGCCATCATCACTGAAGCAGTCA 42026 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 | ||||| | ||||| | ||||| ||||| || ||| | ||||| ||||| | Sbjct 42027 CCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTA 42086 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATT 58310 | | |||| ||||||||||||| || ||||| || ||| |||||| | | Sbjct 42087 AGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAA-- 42144 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 ||| || |||||||| | || || || || || ||| | ||||| |||| Sbjct 42145 CAAGAAGTTC--TACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 42202 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 |||||||| ||||| ||||| || ||| | || || || ||| || || ||| | Sbjct 42203 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTGTCATGGCC 42262 Query 58431 GGTAACAAGTTGGAGGACGA 58450 ||| |||| ||| || || Sbjct 42263 AGTACCAAGAAGGAAGAGGA 42282 Score = 105 bits (116), Expect = 6e-18 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || || ||||| || || ||||| | |||||| | ||||| Sbjct 41342 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41401 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||| | ||| ||| | | ||||| || ||| || || || Sbjct 41402 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41461 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || |||||||| || ||||| || ||||||||||| | | ||| | Sbjct 41462 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG- 41520 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||| ||||| || || |||| || ||||||| || || || || | | Sbjct 41521 -TTTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGA 41579 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || || | || || |||| || || || |||||||| || || | ||||| Sbjct 41580 TGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 41634 >seq16 Length=1024933 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| |||||||| ||||| | || || ||| | Sbjct 591446 CATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAG 591387 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| ||| ||| | |||||||||||| | ||||| |||| Sbjct 591386 CGACACGATAGACAACGTCAAGACAAAGA-TCCAGGACAAGGAAGGTATTCCGCCAGACC 591328 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || ||||| |||||| | || ||| ||| || |||||||| Sbjct 591327 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 591268 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || | ||| |||| || | || | ||||||| Sbjct 591267 ACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGTA 591217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766294130480