Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq19 114 3e-20 seq14 89.7 1e-12 >seq19 Length=1505300 Score = 114 bits (126), Expect = 3e-20 Identities = 289/433 (67%), Gaps = 25/433 (6%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 41808 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 41867 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | |||| || ||||||| |||||| || |||| || | | Sbjct 41868 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 41927 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGT----TGAAAAAGGGTTTTGTTGAT 102091 ||||||| || || || ||||| ||| | |||| | | | | || Sbjct 41928 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 41987 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGA---AATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 ||||| || | |||| || |||||||||| ||| || || || Sbjct 41988 ACCCC----------AGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAG 42037 Query 102149 GAATTTCTCACAGTTTCCCT-GCCTGTTAAATTAGTGGGAATGAACTGC-AAGTTGATGA 102206 || || | || | | |||| ||||| || | || ||||| ||| ||| | ||| Sbjct 42038 GAGTTCTTGACCGATGCCCTCCCCTGTGCCCTT-CTCGGCATGAA-TGCTAAGCTCATGT 42095 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCA 102264 ||||||||||||| || || || |||| || | |||| | || || || ||| Sbjct 42096 GCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAG--AAGTT 42153 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 ||| || |||||||||||| |||||||||||||| ||||||| |||||||| Sbjct 42154 CTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAA 42213 Query 102325 CTTTTTTGAAAAG 102337 ||| || || ||| Sbjct 42214 CTTCTTCGAGAAG 42226 >seq14 Length=2198313 Score = 89.7 bits (98), Expect = 1e-12 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||||||||||||| || || | || ||| || || || || ||||| Sbjct 1895299 CCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1895358 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 || || || || || | | | | | |||||||| || | | ||| || || | || Sbjct 1895359 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCG-GGGT 1895417 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || || ||||| || |||||||| || || | | |||||||||| || Sbjct 1895418 TCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTA 1895477 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||||||||| || | | ||| ||||| || ||||| || || ||||| ||||| Sbjct 1895478 TGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCAT 1895537 Query 95025 GTCCTGAGGGCGCTCA 95040 | ||| || || ||| Sbjct 1895538 ATGCTGTGGCCGTTCA 1895553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583759098145