Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14 210 3e-49 seq19 104 3e-17 >seq14 Length=2198313 Score = 210 bits (232), Expect = 3e-49 Identities = 589/897 (66%), Gaps = 8/897 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| ||||| | ||||| | ||||||||| || | ||| || | | | | Sbjct 1894942 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 1895001 Query 79921 CACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 || || |||| || ||| ||||| ||||| || | ||||||| |||| | || | | Sbjct 1895002 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 1895059 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 ||||||| | || | || || ||||| ||||| || || |||||| | | Sbjct 1895060 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 1895119 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 ||||||| ||||| || |||| ||| || || | | || || || ||||| || | Sbjct 1895120 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 1895179 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||||| || ||||| || | || | | ||| || | || || |||| Sbjct 1895180 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 1895239 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 | | || ||||| || | || ||| ||| ||||||| ||| | |||| Sbjct 1895240 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 1895299 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || || | || || || || || || || | || || ||||| || | Sbjct 1895300 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 1895359 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | || || || || |||||| || || || ||| || |||||| | | |||| Sbjct 1895360 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 1895419 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | ||||| || | || ||||| || || || || |||| | |||| |||||||| | Sbjct 1895420 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 1895479 Query 80399 TCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 | ||||| || || | ||| || | || || || || || || ||||||| ||| Sbjct 1895480 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 1895538 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | |||| | | |||| || || | || ||| || |||| | || Sbjct 1895539 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 1895598 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || || ||||| | ||| |||||| || ||||| | |||| |||||||||||| Sbjct 1895599 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 1895658 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637 || || ||| | || | ||| || | || || || |||| | || Sbjct 1895659 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 1895718 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 80696 || ||||| ||||| |||| | | || || || || || | ||| | || || || Sbjct 1895719 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGT 1895777 Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || || || || |||||||| || || | ||||||||| |||||||| Sbjct 1895778 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1895834 Score = 93.3 bits (102), Expect = 6e-14 Identities = 197/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||||||| || ||||| || || | | ||||| ||||||||||| Sbjct 1893717 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 1893776 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTA-GTTTGGAATAACT 78824 || || || |||||||| |||| || ||| |||||||| || | ||| || | Sbjct 1893777 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 1893835 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || ||| | ||||| || | |||||| || || |||||||| || | || || Sbjct 1893836 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 1893895 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 1893896 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 1893955 Query 78945 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 78992 ||| |||| | ||| | | || || ||||| ||||| || || || || Sbjct 1893956 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGAT 1894006 >seq19 Length=1505300 Score = 104 bits (114), Expect = 3e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||| || || ||||| | || ||||||||||| || |||||| Sbjct 41955 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41896 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| || || || || ||||| Sbjct 41895 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41836 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || |||||||||||||| | || | | | ||| | || || Sbjct 41835 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGG 41776 Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| | || ||||||||||||||||| Sbjct 41775 ATCCATCGAATG-GCCCAATCGGCCTTCTT 41747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268629411160