Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14 228 1e-54 seq19 89.7 7e-13 >seq14 Length=2198313 Score = 228 bits (252), Expect = 1e-54 Identities = 593/897 (66%), Gaps = 8/897 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 |||||||| ||||| | ||| | ||||||||| ||||| || || | | | | Sbjct 1894942 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 1895001 Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 || || |||| || ||| ||||| ||||| || | ||||||| |||| | || | | Sbjct 1895002 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 1895059 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 ||||||| | || | || || ||||| ||||| || || |||||| | | Sbjct 1895060 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 1895119 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 ||||||| ||||| || |||| ||| || || | | || || || ||||| || | Sbjct 1895120 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 1895179 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||||| || ||||| || | || | | ||| || | || || |||| Sbjct 1895180 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 1895239 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | | || ||||| || | || ||| ||| ||||||| ||| | | |||| Sbjct 1895240 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 1895299 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | ||||| || || | || || || || || || || | || || ||||| || | Sbjct 1895300 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 1895359 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | ||||| || ||| |||||| || || || ||| || |||||| | | |||| Sbjct 1895360 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 1895419 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||||| || | || ||||| || || || || |||| | |||| |||||||| | Sbjct 1895420 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 1895479 Query 72482 TCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 | ||||| || || | ||| || | || || || || || || ||||||| |||| Sbjct 1895480 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 1895538 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | |||| | | |||| || || | || ||| || |||| | || Sbjct 1895539 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 1895598 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || || ||||| | ||| |||||| || ||||| | |||| |||| ||||||| Sbjct 1895599 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 1895658 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 72720 || || ||| | || || ||| || | || || || |||| | || Sbjct 1895659 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 1895718 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 72779 || ||||| ||||| |||| | | || || || || || | ||| | || || || Sbjct 1895719 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGT 1895777 Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || ||||| || || || || |||||||| || || ||||||||||| |||||||| Sbjct 1895778 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1895834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/303 (67%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||| || || || |||| || || || | ||||| |||||||||||| Sbjct 1893717 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 1893776 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCT 70907 || || || |||||||| |||| || || |||||||| || | ||| || | | Sbjct 1893777 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 1893835 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || | ||| || || | || ||| || || |||||||| || | || || Sbjct 1893836 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 1893895 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 1893896 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 1893955 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| |||| | ||| | | || || ||||| ||||| || || || || | ||||| Sbjct 1893956 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGATACGGTTTTT 1894015 Query 71085 GAT 71087 || Sbjct 1894016 CAT 1894018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||||| ||| |||| |||||||| || ||||||| | ||| |||| | ||||| Sbjct 1894634 GGCAATAGAAGCCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTC 1894693 Query 71757 AGTGCAAAGATT---ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||||||||| || ||||| ||| || || | || | |||||| |||||| ||| Sbjct 1894694 AGTGCAAAGGTTTGAACTAC---GGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTT 1894750 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || | |||||| ||||| ||||| || | ||||| || |||| | || | ||| || Sbjct 1894751 GCAGGAATCCTTGTAAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGC 1894810 Query 71874 TTTCCA 71879 | ||| Sbjct 1894811 GTACCA 1894816 >seq19 Length=1505300 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/169 (73%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||||||||| || |||||||||||||| || |||||||| || ||||| || || || || Sbjct 41914 TTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGC 41855 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 || || || ||||| || || || || || |||||||||| ||| | || | | | Sbjct 41854 GAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 41795 Query 42226 ACCGGCA---CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTT 42270 || | | || || ||||| | || ||||||||||||||||| Sbjct 41794 TGTGGAATTCTTATCTTGGATCCATCGAATG-GCCCAATCGGCCTTCTT 41747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139040604440