Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq16 105 4e-18 >seq16 Length=1024933 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||||| ||||||| |||||||||||| || ||| || || || || ||||| || Sbjct 591218 ACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGA 591277 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | ||| || | || |||||| ||| || | ||| |||||||| | || Sbjct 591278 CAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGG 591337 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 || ||||| || || ||| ||| || || | | ||||||||| ||| || | Sbjct 591338 AATACCTTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTA 591396 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | |||||||| || ||||| ||||| || || || ||||| || |||||| Sbjct 591397 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 591446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777526183062