Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16 127 2e-24 >seq16 Length=1024933 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| |||| |||||| ||||| || ||||| || | |||||||||| | Sbjct 591219 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 591278 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| ||||||||||| ||||||| | | ||||| ||||| ||| Sbjct 591279 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 591338 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 |||||||| ||||| | || |||| ||||||| | | | ||||| || ||| || | Sbjct 591339 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTC-GC-TGGATTCTA 591396 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||||| ||||| || || || || || || ||||||||||||| Sbjct 591397 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGC 591447 Score = 102 bits (112), Expect = 7e-17 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | || | ||| | ||| ||||||||||| | ||| || || Sbjct 591447 CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAG 591506 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| ||||||||||| ||||||| | | |||||| |||||||| Sbjct 591507 AGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGG 591566 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 || || || ||||| | || || | ||||||| | ||| ||||| || ||| |||| Sbjct 591567 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GC-TGGATTCGA 591624 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | |||| |||||||| || || || ||||||||||| Sbjct 591625 CCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 591661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291093530840