Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14 242 1e-58 >seq14 Length=2198313 Score = 242 bits (268), Expect = 1e-58 Identities = 418/598 (70%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGA 363449 |||||| | |||||| | || | || ||||| || | ||| || | ||| ||| Sbjct 1895610 TTTCGGCTTCAAGACGCTTGAAAGGTCATACCTGCTACGAACCAACGGCAAGGTTGCTGA 1895551 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 ||| || ||||||||| ||||||| ||||| | |||||||| | ||| ||||| Sbjct 1895550 ACGGCCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAA 1895491 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAACA 363567 | ||||||||||| || || | || | | || ||||| || ||| | || || Sbjct 1895490 AGTAATTGAAACATACAATCTCAT--GTCCCAGAAATACTTCACCCATGCCTCTCCCACT 1895433 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | |||||| ||||| | | || || ||| |||| ||||| || | | |||||| Sbjct 1895432 CTCTTCAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAG 1895373 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || || ||||| ||||||| |||||||| |||| |||||| | ||||| |||| | Sbjct 1895372 GAGGACAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACT 1895313 Query 363688 GCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 || || ||||| ||| | | || ||||| | | ||||| || | | | ||||| | Sbjct 1895312 GCTGGAGGAATCGGTCTTAACG-TCCACCGTATCCGTGCCACCGGATCCT-ACATTGCTG 1895255 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || | ||| || || | || ||||||||||||||||| |||| ||||| | Sbjct 1895254 GAACCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCA 1895195 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || |||||||||||||| ||||| ||| || |||||||| || || ||||| Sbjct 1895194 GATATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTTGCTATCTACCTGGAGCCAT 1895135 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || || ||||| |||||||| ||||| ||||| || ||| ||||| || ||| | | Sbjct 1895134 GGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCC 1895075 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 |||| |||||||| |||| || | ||| | |||| || |||||||| || || Sbjct 1895074 GTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGA 1895017 Score = 163 bits (180), Expect = 7e-35 Identities = 625/964 (65%), Gaps = 28/964 (3%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||||||||||||| ||||| | || | |||| ||||| |||| |||| |||| Sbjct 1894828 GCCCAGAAGCTATGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATG 1894769 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||||| |||||||| ||| ||| || || |||||||||| | || | || Sbjct 1894768 CTTTACAAGGATTCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTA-TCCGTAG 1894710 Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | ||||| || || || || ||||||||||||| || || ||| ||| || ||||| Sbjct 1894709 TTCAAACCTTTGCACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAA 1894650 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCA-----G 364344 | | || || || || ||||| | ||||| | | || | ||| || | | Sbjct 1894649 CTTGGCTTCTATTGCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGAATACGATTTTGG 1894590 Query 364345 C-ATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTATCGACA 364399 | | || |||| || || ||| | | ||| || || | ||| | || ||| Sbjct 1894589 CAAACTCCATGAAGTCAC---TCA-GGTCGTTGTCAGAAACTTGAACAGAATCATTGACG 1894534 Query 364400 AGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 ||| | || || || || || ||| || ||| | ||||||||||| |||| | Sbjct 1894533 GGAACCACTACCCGGTTGAAGAGGCACGA-CGAAGCAATTTCCGTCATCGCCCCATTGCT 1894475 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTAT-GATGCTCAAGATGGCATTTGATTCGCC 364517 | || || |||||||| || || | ||| | | | || | || | || || || || Sbjct 1894474 GTGGGGGTCCAGGGCCTTGCCGATGCTTTCCTCGCTCTTCGA-CTGCCCTTCGACTCTCC 1894416 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || || || | || | | ||||| || || | || ||| || |||| || Sbjct 1894415 CGAAGCCAAGCTTTTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGC 1894356 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 |||||||| | || || | | || ||||| | || ||||| || ||| |||| Sbjct 1894355 ATCGTGTGAACTTGCCAAGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTC 1894296 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697 ||||| | | || | ||| | ||||| || ||||| | | || ||| ||||||| Sbjct 1894295 TCAGGGTATCCTTCAATACGATATGTGGAACGTAACGCCGACCGACCTCTGGGACTGGGA 1894236 Query 364698 TACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCGTTACAGCGCC 364754 | || | | | ||||| ||| || ||| | || || ||||| Sbjct 1894235 TGGTCTTAAAGCTGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTT---GCGCC 1894179 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 |||||| || || || ||||| || || |||||||||||| ||||| | || Sbjct 1894178 CATGCCAACTGCCAGCACCAGTCAGATTCTTGGCTTCAACGAGTGCTTTGAACCTTACAC 1894119 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 ||| | || |||||||| || ||| | || || || | || || || | || Sbjct 1894118 CTCCAACATCTACTCACGCCGTGTACTTGCTGGCGAGTTCCAAGTTGTCAACCCATGGCT 1894059 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 |||| || || ||||| ||| |||||| |||| ||||| ||| ||||||||| Sbjct 1894058 TCTCAAAGACCTGGTCGACCTCGGCCTGTGGTCCGACAATATGAAAAACCGTATCATCGC 1893999 Query 364935 CGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTTCCAGAAGATCTGAAGCCTATTTACA 364993 || |||||| | || ||||| || | | | |||| ||| | ||| || | |||| Sbjct 1893998 CGACGGTGGTTCCATCCAAAACATCTCTAACA-TCCCAGCAGACATCAAGGCTCTGTACA 1893940 Query 364994 AAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 | ||||| ||||||||||| || ||| | || | ||||| || ||||| || || | Sbjct 1893939 AGACCGTGTGGGAAATTTCTCAACGTACTATTGTTCAGATGGCCGCTGATCGAGGCGCCT 1893880 Query 365054 TTAT 365057 | || Sbjct 1893879 TCAT 1893876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353282714858