Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq16 111 1e-19 seq12 93.3 4e-14 >seq16 Length=1024933 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| |||||||| ||||| | || |||||| || ||||| |||||| | Sbjct 591219 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 591278 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||| || || || |||| | |||||||||||| || || Sbjct 591279 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 591338 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || ||| |||| || | Sbjct 591339 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACT 591398 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||||| || || || || || ||||| ||||||||| || Sbjct 591399 TCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 591449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| |||||| || |||||||| ||| Sbjct 591744 GCCACCACGGAGACGAAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 591803 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||| || ||||| |||| | ||||||||||| || || Sbjct 591804 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGG 591863 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | ||| ||| ||||||| | Sbjct 591864 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCAC 591923 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | || || ||||| Sbjct 591924 CTCGAGGGTGATAGTCTTGCCGGT 591947 >seq12 Length=4066456 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||| |||||||| |||||||| ||||| Sbjct 3513246 CCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAA 3513187 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 3513186 AGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGA 3513127 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 3513126 ATTCCCTCCTTGTC 3513113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012687896960