Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14 210 3e-49 seq19 102 1e-16 >seq14 Length=2198313 Score = 210 bits (232), Expect = 3e-49 Identities = 592/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Plus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 |||||| |||||||| ||||| | |||| ||| ||||||| |||| || || Sbjct 1894933 TACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAG 1894992 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103 | | | ||| || || | | | ||||| ||||| || | ||||||| |||| | Sbjct 1894993 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAG 1895052 Query 63104 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63163 || | |||||||| | || | ||| || ||||| ||||| || || ||| Sbjct 1895053 GCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 1895112 Query 63164 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63223 ||| | | ||||||| ||||| || |||| ||| || || | | || || || ||| Sbjct 1895113 AACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTG 1895172 Query 63224 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63283 || || ||||| || | ||||| || ||||| || | || | | ||| || | || Sbjct 1895173 TTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATT 1895232 Query 63284 CCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63343 || ||||| | || ||||| || | || ||| ||| ||||||| ||| | Sbjct 1895233 CCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACG 1895292 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 ||||| ||||| || || | || || || || || || || | || || ||| Sbjct 1895293 TTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAG 1895352 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || || || ||||| || ||| |||||| || || || ||| || |||||| | | Sbjct 1895353 ATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGC 1895412 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 ||||| ||||| || | || ||||| || || || || |||| | || | ||| Sbjct 1895413 GGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGA 1895472 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 63582 ||||| || ||||| || || | ||| || | || || || || || || ||||| Sbjct 1895473 TTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCAT 1895531 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 || ||| ||||| || | |||| | | |||| ||| || | || ||| || |||| Sbjct 1895532 TATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTC 1895591 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 | || || || || ||||| | ||| |||||| || ||||| | |||| ||||||| Sbjct 1895592 AAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 1895651 Query 63703 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATG 63762 ||||| || || ||| | || | ||| || | || || || ||| | Sbjct 1895652 GAGTTCTTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGG 1895711 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtt 63821 || || ||||| || || |||| | | || || || || || | ||| | | Sbjct 1895712 CCGGCCGTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCT 1895770 Query 63822 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 63881 | || |||| |||||| || || || || |||||||| || || ||||||||||| || | Sbjct 1895771 TCTTGGTTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTG 1895830 Query 63882 GATG 63885 |||| Sbjct 1895831 GATG 1895834 Score = 93.3 bits (102), Expect = 5e-14 Identities = 197/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | ||||||||| || ||||| || || | | ||||| ||||||||||| Sbjct 1893717 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 1893776 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 61956 || || || |||||||| |||| || || |||||||| || | ||| || | Sbjct 1893777 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 1893835 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 || ||| | ||||| || | |||||| || || |||||||| || | || || Sbjct 1893836 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 1893895 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076 ||||| | | ||| || ||| | ||||||||| | || || || | ||| || Sbjct 1893896 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 1893955 Query 62077 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62124 ||| |||| | ||| | | || || ||||| ||||| || || || || Sbjct 1893956 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGAT 1894006 >seq19 Length=1505300 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| |||||| || ||||| | || | ||||||||| || |||||| Sbjct 41955 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41896 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || ||||| || || || || |||||| Sbjct 41895 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41836 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 || || || || || |||||||||| ||| Sbjct 41835 ATACCCTCGACGGCAGCAAAGGCAACAAG 41807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631849512400