Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq16 176 8e-39 seq19 150 3e-31 seq18 86.0 1e-11 >seq16 Length=1024933 Score = 176 bits (194), Expect = 8e-39 Identities = 181/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || | |||| ||||| || | |||| ||| || |||||||||||| Sbjct 591213 TAGTTACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAA 591272 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||| || |||| || || || | ||| || || || || ||||| | || ||||| Sbjct 591273 TCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCT 591332 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GA 68407 || ||||| ||||||||||| || ||||||| ||||||| || || ||||| ||| || Sbjct 591333 GGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTC-GCTGGA 591391 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 591392 TTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCAT 591445 Score = 134 bits (148), Expect = 3e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || || || || ||||||||||| || || ||| Sbjct 591447 CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAG 591506 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || | ||| || || || || ||||| | ||| ||||| || || Sbjct 591507 AGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGG 591566 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | ||||||| ||||||||||| ||| ||||| || Sbjct 591567 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATTCGAC 591625 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | |||||||| || || || || || || |||| || Sbjct 591626 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGACTA 591666 >seq19 Length=1505300 Score = 150 bits (166), Expect = 3e-31 Identities = 321/474 (68%), Gaps = 18/474 (4%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || || |||||||| || || || |||||||||||||| |||||| | Sbjct 42259 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 42200 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG---CGCCAAACTGCTTGGGGTA 10051 |||||| || ||||||||||| |||||||| || | |||| ||| || Sbjct 42199 GAGGGAGATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTT---GTT 42143 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 ||| || || || || | || || |||||||| |||||||||| ||| || | | Sbjct 42142 ACCAAGAGCAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGC 42083 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 |||||||| | | | ||||||| ||| ||| | ||| |||| ||| ||| ||| Sbjct 42082 ATTCATGCCGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGAC 42023 Query 10172 CGCTTCCTCGACGATG--CTCTTTACCAC----GTCAAGGGACAGCTTGTTCTCGAGCTT 10225 ||||| || |||| ||| | ||| |||| |||| | | ||| ||| | Sbjct 42022 TGCTTCAGTGATGATGGCCTCAACAGCACTGGGGTCA--GGAC-GATAGTT---GAGGTG 41969 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 || |||| || |||| | ||| ||||| ||||| ||| ||||| ||||| Sbjct 41968 AGAGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTT 41909 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 ||| || || ||||||||||| || || || ||||||||| |||| | ||| || Sbjct 41908 GGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 41849 Query 10346 CCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA 10399 ||| ||| | || |||||| ||| | |||| || ||||||| |||||| Sbjct 41848 GCCGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 41795 >seq18 Length=2912371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||||||||| | ||| | || || ||||| | ||||| |||||| | ||| Sbjct 2744173 GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTGCCGGAGCC 2744232 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936 |||||| || | ||| ||||| | | |||||||| | |||| | || ||| || Sbjct 2744233 GTTGGGGCCCAGGAGACCGTAGCGCTGGCCGCGCTTAAGACGGAGGTGGGTCTGGTTGAG 2744292 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||||||| |||| ||||| ||| ||| ||| | ||| || |||||||| || || Sbjct 2744293 CAGGATCTTGGCACCGTAGGCGAGGTTGAAGGTGCAGTTGCAGAGATCCTCACCTTCTTC 2744352 Score = 84.2 bits (92), Expect = 4e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 224465 ACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGACTCGCGGTCAAGG 224524 ||||| || |||| |||| ||||| || || ||||| || || || ||||| || Sbjct 2742776 ACACCACCCTCGAAGGACTTGAGGGCCTTGGAGAGGGCGCCGAGAGAGTCACGGTCGAGA 2742835 Query 224525 AAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAGGGCTGCACCAACC 224584 |||| || ||||| || |||| ||| | ||| |||| ||||| | || | | Sbjct 2742836 TAGTTGGTTGGCTCGTCGAGGACGATCAGGTGAGGGCGTTGCCAGGAGCAGGCGGCGAGG 2742895 Query 224585 ACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGAGTGAGTCGTGAATTCG 224644 || | ||| || ||||||||||||||| ||||| || |||||||| | || |||| Sbjct 2742896 ACGACCTTGACACGCTGACCGCCAGAGAGACCGCGCATGCGCGAGTGGGAGACGAGTTCG 2742955 Query 224645 GGGTCAAGACC 224655 | ||| || || Sbjct 2742956 GCGTCGAGGCC 2742966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622181114680