Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19 228 2e-54 seq14 113 9e-20 >seq19 Length=1505300 Score = 228 bits (252), Expect = 2e-54 Identities = 327/449 (73%), Gaps = 19/449 (4%) Strand=Plus/Plus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || |||||| | ||||||||||| || |||||| ||| ||||||||||||||||| Sbjct 41807 CTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 41866 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| || |||||||||||||||||||| |||||||||||| | | Sbjct 41867 TGGCTGAAGAAGCGTGGTCTC-ATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCG 41925 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||||| || || || | || ||||||||||| |||||||| ||||||| || | Sbjct 41926 TGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTC---TCACCTCA---ACTA 41979 Query 42884 --GCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | ||| || | || |||||||||||| || || || |||||| |||| Sbjct 41980 TCGTCCTGACCCCAGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGA 42039 Query 42941 GTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 |||| | || | | || ||| ||| |||| |||||||||| | ||||||||| Sbjct 42040 GTTCTTGACCGATGCCCTCCCCTGTG-CCCTTCTCGGCATGAATGCTAAGCTCATGTGCC 42098 Query 43000 AGTACATCCAGTACGTCGCCGA---CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCT 43056 ||||||| ||| ||||||||| | |||| | ||| | ||| || ||| Sbjct 42099 AGTACATTGAGTTCGTCGCCGATAGGCTTCTCGT-TGC--TCTTGGTAACAAGAAGTTCT 42155 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 ||||||| | |||||||||||| ||||| || ||||| | | ||||||||||||| Sbjct 42156 ACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAACT 42215 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||||||||| || | || |||||| Sbjct 42216 TCTTCGAGAAGCGTGTTGGAGATTACCAG 42244 >seq14 Length=2198313 Score = 113 bits (124), Expect = 9e-20 Identities = 251/369 (68%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 |||||| | || || | || ||||||| || ||||||| ||||||| ||||| ||| Sbjct 1895094 GTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGC 1895153 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAG 245194 | ||| || || ||||||||||| |||||||| | ||| ||| | || | |||||| Sbjct 1895154 AAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA-CAT-ATCTGGCAGTGTTGTTGAAC 1895211 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 | || || | || || || ||||| ||| ||||||||| || ||||||| || Sbjct 1895212 ACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCG 1895271 Query 245255 TTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 || | | || | | | ||||| | || | ||| || || ||| || || | Sbjct 1895272 GTGGCAC---GGATAC-GGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAA 1895327 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || ||| |||| | ||||| || || || || |||||| |||||||| | || Sbjct 1895328 AGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAG 1895387 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 |||||||| | || || |||| ||| | | | ||||| |||||||| ||| || Sbjct 1895388 GAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATG 1895447 Query 245431 GGTAAAGTA 245439 ||| ||||| Sbjct 1895448 GGTGAAGTA 1895456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338975719440